Table 5 tissue-specific contigs
Library number | Tissue | Best swissprot hit | e-value | Species | Reference | Clone | Genbank accession number | Sigenae contig name | Contig depth |
|---|---|---|---|---|---|---|---|---|---|
1 | pituitary gland | FSHB_PIG (P01228) | 5.00E-78 | Pig | scan0030.f.01 | BX916158 | BQ597499.1.p.sc.3 | 26 | |
2 | stomach | MUC5A_HUMAN (P98088) | 0.00E+00 | Human | [46] | scac0042.l.09 | BX674468 | BX674468.1.p.sc.3 | 3 |
3–4 | muscle/liver | MYOZ1_PIG (Q4PS85) | 1.00E-132 | Pig | [47] | scac0038.p.22 | BX673406 | CF179827.1.p.sc.3 | 23 |
4 | heart | DNJA4_HUMAN (Q8WW22) | 0 | Human | [48] | scan0007.c.04 | BX919910 | BM190198.1.p.sc.3 | 11 |
4 | muscle/heart | MYOZ2_PONPY (Q5R6I2) | 1.00E-121 | Orangutan | [47] | scac0043.l.05 | BX676752 | BM189987.1.p.sc.3 | 12 |
4 | muscle | CAV3_HUMAN (P56539) | 1.00E-81 | Human | [49] | scac0041.p.13 | BX672700 | BX672700.1.p.sc.3 | 5 |
5 | epididymis | RNAS1_RAT (P00684) | 1.00E-08 | rat | [36] | scan0009.m.06 | BX919901 | BX664890.1.p.sc.3 | 23 |
5 | epididymis | GPX5_PIG (O18994) | 1.00E-129 | Pig | [50] | scan0028.l.11 | BX914773 | BX914773.1.p.sc.3 | 6 |
6 | ovary | GDF9_SHEEP (O77681) | 0 | sheep | [37] | scac0039.l.15 | BX675058 | BX671944.1.p.sc.3 | 13 |