From: Systematic identification of stem-loop containing sequence families in bacterial genomes
Species | Family | P | Conserved structure | Conserved SLS position | SLS folding aptitude | Type |
---|---|---|---|---|---|---|
B. anthracis | Bcr1 | 0.99 | s | + | + | I |
B. halodurans | Bhal-1 | 0.98 | s | + | ++ | I |
 | Bhal-2 | 0.99 | c |  | - | I |
C. perfringens | Clop-1 | 0.96 | s | + | + | I |
C. tetani | Clot-1 | 0.95 | s | + | ++ | I |
E. faecalis | Efa-1 | 0.85 | s | + | +++ | I |
 | Efa-2 | 1.00 | s | + | - | G |
L. johnsonii | Lac-1 | 0.97 | c | +° | - | G |
S. aureus | Sta-1 | 0.84 | s | + | +++ | I |
 | Sta-2 | 1.00 | s | + | ++ | S |
 | Sta-3 | 0.97 | s | + | + | I |
B. melithensis | Bru-RS | 0.98 | s | + | + | I |
R. conorii | Rpe-4 | 0.73 | s | + | - | I |
 | Rpe-5 | 1.00 | s | + | + | I |
 | Rpe-6 | 0.45 | - | +° | + |  |
 | Rpe-7 | 0.99 | s | + | ++ |  |
M. genitalium | Myg-1 | 0.06 | - | +° | - | I |
M. pneumoniae | Myp-1 | 0.00 | - | +° | - | G |
 | Myp-2 | 0.95 | s | + | ++ | G |
 | Myp-3 | 0.89 | s | + | - | G |
 | Myp-4 | 0.09 | - | +° | - | G |
 | Myp-5 | 0.74 | s | + | - | G |
 | Myp-6 | 0.55 | c |  | - | G |
 | Myp-7 | 0.67 | s | + | - | G |
C. diphtheriae | Cod-1 | 0.97 | s | + | +++ | I |
 | Cod-2 | 0.98 | s |  | - | G |
 | Cod-3 | 0.99 | s | + | +++ |  |
M. tuberculosis | Myt-1 | 0.74 | s | + | +++ | Â |
 | Myt-8 | 0.90 | s | + | ++ |  |
M. leprae | REPLEP | 1.00 | c | +° | - | I |
 | RLEP | 1.00 | s | + | ++ | S |
 | Myl-1 | 0.61 | s | + | ++ | S |
 | Myl-2 | 0.97 | s | + | + | S |
B. bronchiseptica | Bor-1 | 0.86 | s | + | ++ | I |
 | Bor-2 | 1.00 | s | + | - | I |
B. pertussis | Bor-1 | 0.93 | s | + | ++ | I |
N. meningitides | ATR | 1.00 | s | + | - | I |
 | Nem-2 | 0.93 | s | + | + |  |
 | Nem-4 | 0.93 | s | + | +++ | I |
 | dRS3 | 0.98 | c |  | - | I |
 | NEMIS | 1.00 | s | + | + | I |
 | Rep2 | 0.98 | s | + | + | I |
P. multocida | Pam-1 | 0.96 | s | + | +++ | S |
E. coli | BoxC | 0.99 | c | +° | - |  |
 | Eco-1 | 0.18 | - | +° | - | G |
 | ERIC | 0.94 | s | + | ++ | S |
 | PU-BIME | 0.94 | s | + | + |  |
H. influenzae | Hin-1 | 0.96 | s | + | + | I |
P. aeruginosa | Pae-1 | 0.97 | s | + | ++ | I |
 | Pae-3 | 0.26 | - | +° | - | G |
 | Pae-4 | 0.93 | s | + | ++ |  |
P. putida | Ppu-1 | 0.97 | s | + | + | I |
 | Ppu-2 | 1.00 | s | + | +++ | S |
 | Ppu-4 | 0.95 | s | + | - | I |
 | Ppu-9 | 0.54 | s | + | - | I |
S. typhi | PU-BIME | 0.97 | c | Â | - | I |
 | PU*-BIME | 0.98 | s | + | - |  |
S. typhimurium | PU-BIME | 0.98 | s | + | - | Â |
 | Sal-1 | 0.94 | c |  | - | I |
 | Sal-2 | 1.00 | c |  | - | G |
Y. pestis | ERIC | 0.90 | s | + | - | I |
 | YPAL | 1.00 | s | + | +++ | I |
 | YPAL* | 0.96 | c |  | - | I |