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Table 3 Comparison of publicly available noncoding datasets to coding CSTs and currently annotated RefSeq coding sequences.

From: Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes

Non Coding Elements datasets

Reference

N° el

CST

Coding CST/RefSeq CDS

Ancora

[22]

267641

96%

0

CONDOR

[21]

4554

98%

0

Berkeley (*)

[23]

939457

51%

239

Penn State (*)

[23]

452517

85%

261

UCSC (*)

[23]

1007256

59%

345

  1. (N° el:) number of noncoding elements of the dataset; (CST) percentage of elements of the set corresponding to a CST; (Coding CST/RefSeq CDS) number of elements of the set which correspond to a coding CST and to the CDS of a human RefSeq mRNA. (*) Elements of these sets refers to hg10 human assembly. Therefore we preventively converted their coordinates to current assembly by using LiftOver conversion tool.