Table 3 Other small RNAs and cis-regulatory RNA elements detected in the chromosome of S. meliloti 1021 by the global scoring procedure.
From: Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011
Prediction | Rfam1 | IgR coordinates | upstream ORF2 | RNA element2 | downstream ORF2 | GS3 | Ref. |
|---|---|---|---|---|---|---|---|
RNAseP RNA | y | 2356367–2357249 | SMc01857< | < | SMc01856< | 168 | [73] |
FMN riboswitch | y | 2398059–2398373 | SMc01608> | > | ribH2 (SMc01609)> | 127 | [67] |
4.5S RNA (SRP) | y | 259823–260123 | SMc02904< | > | dnaX> | 41 | [67] |
Glycine riboswitch | y | 1674762–1675635 | gcvT< | < | SMc01242> | 37 | [67] |
ssrA (tmRNA) | n | 2290955–2291142 | SMc01449< | > | SMc01450> | 33 | [23] |
smrC45 (speF) | y | 3105052–3105637 | SMc02983< | < | SMc02984> | 27 | [65] |
Thiamine riboswitch | y | 3532759–3533026 | SMc03868< | > | SMc03869> | 19 | [67] |
ilvIH cis regulatory | n | 2276530-2276876 | SMc01431 (ilvIH)< | < | SMc01432> | 16 | [74] |
Cobalamin riboswitch | y | 1999510–1999806 | SMc00166< | < | SMc00165< | 16 | [67] |
Cobalamin riboswitch | n | 2122378–2123250 | SMc04305 (cobPW)< | < | SMc04306> | 14 | [67] |
Cobalamin riboswitch | y | 954440–955076 | SMc00983< | > | SMc00982> | 11 | [67] |
ybhL cis regulatory | y | 3505880–3506125 | SMc03838> | > | SMc03839> | 3 | [65] |
serC cis regulatory | y | 2938993–2939230 | serC< | < | SMc00639< | 2 | [65] |
Methionine riboswitch | y | 3461713–3461838 | SMc03796> | > | metA> | - | [65] |
Methionine riboswitch | y | 580068–580264 | metZ< | < | SMc02218> | - | [65] |