Table 1 Operons tested for their ArcA(-P) binding activity by EMSA
From: Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses
Operon | Fold change a | Â | Â | Â | |
|---|---|---|---|---|---|
| Â | +O2 | -O2 | Positionb | Putative motifc | Featured |
so0266-9 (ccmF-1) | 1.07 | 0.94 | -71 | GTGAACAGAATGTTA | B & E |
so0314 (speF) | -3.03 | -2.79 | Â | Â | E |
so0396 (frdC) | -0.07 | -0.27 | Â | Â | TCA |
so0397-9 (fdrC) | 0.39 | 0.25 | Â | Â | TCA |
so0432 (acnB) | -0.54 | -0.21 | Â | Â | TCA |
so0756 (aroG) | -0.84 | -2.18 | -164 | TTTAAAAATATGTTA | B & E |
so0806 | 3.22 | 3.64 | -45 | GAAAATTTTTTGTTA | B & E |
so0866 | 7.00 | 8.08 | -136 | GTAATTTAAATGTTA | B & E |
so1307 (aqpZ) | 1.42 | 0.87 | -197 | GTTAACAAAGCGATA | B & E |
so1427-30 | -1.78 | -4.38 | -246 | GTTAATAAAATGTTT | B & E |
so1623 (ptsG) | 2.00 | 3.26 | -472 | GTTACTTTATTGTTA | B & E |
so1661 | 2.47 | 3.11 | -219 | GTTAAATAATTGTTA | B & E |
so1806 (pspF) | 2.63 | 2.42 | -90 | GTTAATAAAATGTTT | B & E |
so1821 | -2.25 | -3.18 | -230 | GTTAATTTGATGTTA | B & E |
so1926 (gltA) | -0.58 | -0.32 | Â | Â | TCA |
so1930-3 (sucA) | 0.18 | 0.66 | Â | Â | TCA |
so1944 | 1.12 | 1.80 | -65 | GTTAAGTAATTGTAA | B & E |
so2099-5 (hoxK) | 4.08 | 2.40 | -147 | GTTAATTAAATGTCA | B & E |
so2389 (emrD) | -4.44 | -3.18 | Â | Â | E |
so2460 | 5.73 | 6.83 | Â | Â | E |
so2629 (icd) | -0.07 | -0.49 | Â | Â | TCA |
so2706 (astB) | 0.96 | 1.95 | -209 | GTTGAAAAAATGTAA | B & E |
so2727 | -0.97 | -1.47 | -220 | GTTATTCAAATGTAA | B & E |
so3099 | -5.64 | -4.64 | -281 | GTTAATTAAATTATA | B & E |
so3106 (aprE) | 5.44 | 5.94 | -127 | GTAAATTAATTGTTA | B & E |
so3507 | -0.56 | 0.70 | -90 | GTTAACTCAATGTTA | B |
so3565 (cpdB) | -1.89 | 2.10 | -257 | GTTAATTAATTGTTG | B & E |
so3659 | 2.83 | 3.53 | -205 | GTAAAATCGATGTTA e | B & E |
so3855 (sfcA) | 0.36 | 0.49 | -177 | GTTAATTGATTGTAA | B |
so4245 (argA) | 0.19 | 0.41 | -178 | GTTAAAAAAATGTGA | B |