Table 1 General features of thirteen M. tuberculosis genomes
From: Comparing Mycobacterium tuberculosis genomes using genome topology networks
Strain ( M. tuberculosis ) | Gene Bank ID | Source | CDSs | Added genes | CDSs after refinement | COG annotated | \( \frac{\boldsymbol{COGs}}{\boldsymbol{CDSs}} \) (%) | orthoMCL Annotated | \( \frac{\mathbf{Orthologs}}{\mathbf{CDSs}} \) (%) |
|---|---|---|---|---|---|---|---|---|---|
CCDC5079 | NC_021251.1 | CHN | 4,156 | 249 | 4,405 | 2,880 | 65.38 | 4,156 | 94.35 |
CCDC5180 | NC_017522.1 | CHN | 3,590 | 813 | 4,403 | 2,862 | 65.00 | 4,111 | 93.37 |
CDC1551 | NC_002755.2 | USA | 4,189 | 126 | 4,315 | 2,762 | 64.01 | 4,018 | 93.12 |
CTRI 2 | NC_017524.1 | RUS | 3,944 | 427 | 4,371 | 2,849 | 65.18 | 4,139 | 94.69 |
F11 | NC_009565.1 | ZA | 3,941 | 442 | 4,383 | 2,862 | 65.30 | 4,141 | 94.48 |
H37Ra | NC_009525.1 | - | 4,034 | 372 | 4,406 | 2,866 | 65.05 | 4,168 | 94.60 |
H37Rv | NC_000962.3 | - | 4,111 | 372 | 4,483 | 2,867 | 63.95 | 4,158 | 92.75 |
KZN 1435 | NC_012943.1 | ZA | 4,059 | 325 | 4,384 | 2,859 | 65.21 | 4,148 | 94.62 |
KZN 4207 | NC_016768.1 | ZA | 3,996 | 376 | 4,372 | 2,851 | 65.21 | 4,136 | 94.60 |
KZN 605 | NC_018078.1 | ZA | 4,001 | 349 | 4,350 | 2,835 | 65.17 | 4,122 | 94.76 |
RGTB327 | NC_017026.1 | IN | 3,691 | 325 | 4,016 | 2,459 | 61.23 | 3,594 | 89.49 |
RGTB423 | NC_017528.1 | IN | 3,622 | 271 | 3,893 | 2,379 | 61.11 | 3,462 | 88.93 |
UT205 | NC_016934.1 | COL | 3,796 | 433 | 4,229 | 2,778 | 65.69 | 4,011 | 94.85 |