Table 2 Summary of read numbers and composition of raw reads based on RNA-seq data
Parameters | rIFN treated TO-cells | SAV-3 infected TO-cells | TO-cells |
|---|---|---|---|
A: Summary of reads based on RNA-seq | |||
Total Reads | 23,113,874 (100.00%) | 24,608,338 (100.00%) | 23,421,631 (100.00%) |
Total Mapped Reads | 18,025,140 (77.98%) | 20,547,388 (83.50%) | 17,901,910 (76.43%) |
Unique Match | 16,482,782 (71.31%) | 19,313,673 (78.48%) | 16,225,274 (69.27%) |
Multi-position Match | 1,542,358 (6.67%) | 1,233,715 (5.01%) | 1,676,636 (7.16%) |
Total Unmapped Reads | 5,088,734 (22.02%) | 4,060,950 (16.50%) | 5,519,721 (23.57%) |
B: Composition of raw reads | |||
Reads containing adaptors | 50,0443 (2.12%) | 670,840 (2.65%) | 393,459 (1,65%) |
Reading containing N | 0,0 (0.05) | 0,0 (0,0) | 0,0 (0,0%) |
Low quality reads | 22858 (0.10%) | 31,578 (0,12%) | 29,011 (0,12%) |