Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal genomes

Table 2 Association between dinucleotide signatures preferentially found at C:G to T:A mutation sites and presence/absence of DNMT1 genes

Organism	Predominant	Secondary	Dnmt1 class I	Dnmt1 class IIA	Dnmt1 class IIB
	C to T	C to T	RID/Masc1	Masc2	Dim2
	Dinucleotide mutation bias	Dinucleotide mutation bias	Uniprot accession no. of similar protein	Uniprot accession no. of similar protein	Uniprot accession no. of similar protein
Lmac	CpA	-	E4ZP97_LEPMJ	Nd	E4ZS83_LEPJM
Mory	CpT	CpA	Q2KFY7_MAG07	Nd	Nd
BcinT4	CpT	CpA	G2XR28_BOTF4	Nd	G2YFT1
BcinT4	CpT	CpA	G2YJ06_BOTF4	Nd	G2YFT1
BcinB05.10	CpA	CpT	A6SAR0_BOTBB	Nd	Nd
BcinB05.10	CpA	CpT	A6RJV4_BOTFB	Nd	Nd
Sscl	CpA	CpT	A7E1B2_SSCL1	Nd	A7ERM2_SSCL1
Sscl	CpA	CpT	A7E505_SSCL1	Nd	A7ERM2_SSCL1
Bgra	¹CpG	-	Nd	Nd	Nd
Tmel	CpG	CpA	D5GQ57_TUBMM	Nd	D5G9M5_TUBMM
Pgra	¹CpG	-	Nd	E3K0G1_PUCGT	Nd
Mlar	¹CpG	-	Nd	F4RK98_MELLP	Nd
Mvio	CpG	-	Nd	MVLG_04160	Nd

Results are shown if the proportion of copies exhibiting a mutation bias was over 10%.
¹Very weak bias (10% of copies). Nd: not determined.

ISSN: 1471-2164