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Table 4 Tissue-specific SNPs

From: Genomic factors related to tissue tropism in Chlamydia pneumoniae infection

Position

Locus_tag

Description

Clinical isolates from the respiratory tract

Clinical isolates from blood monocytes and artery vessels

Clinical isolate from conjunctiva

   

CM1

CWL011

CWL029

GiD

H12

K7

MUL2216

U1271

UZG1

YK41

J138

AR39

Panola

CWL029c

CV14

CV15

PB1

PB2

Wien1

Wien2

Wien3

TW183

95,992

CPn_0081

RNA Polymerase Beta

G

G

G

G

G

G

G

G

G

G

G

G

G

G

T

G

T

T

T

G

G

G

326,721

CPn_0289

Neutral Amino Acid (Glutamate) Transporter

G

G

G

G

G

G

T

G

G

G

G

G

G

G

T

T

T

T

T

T

T

G

329,607

CPn_0292

Inclusion Membrane Protein C

G

G

G

G

G

G

T

G

G

G

G

G

G

G

T

T

T

T

T

T

T

G

576,846

CPn_0496

CT391 hypothetical protein

C

C

C

C

C

C

A

C

C

C

C

C

C

C

A

A

A

A

A

A

A

C

733,006

CPn_0650

Acyl-Carrier UDP-GlcNAc O-Acyltransferase

C

C

C

C

C

C

C

C

C

C

C

C

C

C

G

G

G

G

G

C

C

C

800,395

CPn_0714

Glutamyl tRNA Reductase

G

G

G

G

G

G

G

G

G

G

G

G

G

G

T

T

G

T

T

T

T

G

896,637

CPn_0793

sigma regulatory family protein - PP2C phosphatase (RsbW antagonist)

G

G

G

G

G

G

T

G

G

G

G

G

G

G

T

T

T

G

T

T

T

G

1,050,652

CPn_0920

Sulfite Synthesis/biphosphate phosphatase

C

C

C

C

C

C

C

C

C

C

C

C

C

C

A

A

A

A

A

C

C

C

1,156,117

CPn_1006

CT849 hypothetical protein

T

T

T

T

T

T

C

T

T

T

T

T

T

T

C

C

C

C

C

C

C

T

  1. SNP loci that distinguish respiratory and vascular isolates with the corresponding genes in CWL029 and their genotype in the different isolates. All SNPs are non-synonymous.
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BMC Genomics

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