A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits

Li, Huihui; Vikram, Prashant; Singh, Ravi Prakash; Kilian, Andrzej; Carling, Jason; Song, Jie; Burgueno-Ferreira, Juan Andres; Bhavani, Sridhar; Huerta-Espino, Julio; Payne, Thomas; Sehgal, Deepmala; Wenzl, Peter; Singh, Sukhwinder

doi:10.1186/s12864-015-1424-5

BMC Genomics

Table 1 Markers distributed on different chromosomes in three populations and consensus map

From: A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits

	Consensus map				PBW343/Kingbird							PBW343/Kenya Swara							PBW343/Muu
Chr.	LG ^α	Length	Total	UP ^β	LG ^α	Length	silicoDArT	SNP	silicoDArT & SNP	Total	UP ^β	LG ^α	Length	silicoDArT	SNP	silicoDArT & SNP	Total	UP ^β	LG ^α	Length	silicoDArT	SNP	silicoDArT & SNP	Total	UP ^β
1A	1	202.57	1275	189	2	152.57	601	102	11	714	128	2	159.47	584	102	14	700	63	2	34.31	128	40	3	171	21
1B	2	233.25	3640	437	1	151.16	2183	106	25	2314	306	2	124.23	2459	86	37	2582	97	1	113.87	1261	134	27	1422	106
1D	1	110.61	274	64	2	60.61	144	20	0	164	39	1	18.95	146	16	1	163	16	1	56.93	57	31	0	88	20
2A	2	160.79	1258	185	1	80.02	393	53	8	454	91	4	157.92	664	60	15	739	77	2	176.28	299	146	13	458	75
2B	1	270.05	3037	403	2	220.05	1480	204	35	1719	253	2	185.33	1605	124	43	1772	107	2	222.92	476	193	20	689	126
2D	2	37.23	1347	58	1	22.29	58	2	0	60	14	1	16.85	1184	34	28	1246	28	2	60.58	52	14	4	70	20
3A	1	255.06	1285	185	1	235.9	443	119	7	569	108	4	191.63	698	116	19	833	75	2	60.58	191	74	11	276	37
3B	2	329.89	2770	411	2	314.89	1146	226	17	1389	262	1	250.53	1487	138	30	1655	121	2	233.94	568	206	27	801	126
3D	1	52.57	433	57	1	52.57	75	10	0	85	24	2	66.38	339	10	3	352	29	1	7.3	9	11	0	20	7
4A	2	152.95	1838	232	1	188	760	105	5	870	155	2	121.16	1215	61	17	1293	90	1	18.25	4	4	0	8	5
4B	1	94.29	595	98	1	94.29	261	59	8	328	61	1	128.25	297	30	7	334	34	1	32.85	38	28	0	66	24
4D	1	42.86	119	29	1	42.86	47	26	2	75	19	1	15.79	42	3	0	45	5	1	18.25	31	7	0	38	10
5A	1	131.56	448	89	1	88.89	91	25	0	116	27	3	83.16	191	36	6	233	34	2	135.77	104	69	5	178	41
5B	1	287.15	1958	276	2	237.15	855	129	20	1004	159	3	210.54	900	79	25	1004	103	2	217.15	294	152	11	457	89
5D	1	31.76	188	19	1	4.86	48	8	1	57	9	1	32.63	127	9	1	137	7	1	13.14	42	18	3	63	6
6A	2	159.17	1521	164	1	132.57	435	47	10	492	72	3	104.21	972	71	14	1057	78	2	128.1	322	117	14	453	51
6B	1	224.42	1989	279	1	224.42	846	85	7	938	145	1	124.26	1227	114	27	1368	115	2	189.42	596	139	12	747	93
6D	1	34.92	316	40	1	25.14	107	13	1	121	17	2	79.13	186	16	4	206	23	1	21.9	35	11	2	48	9
7A	2	190.49	1799	268	1	206.91	718	99	13	830	152	3	220.58	873	94	16	983	79	3	140.15	364	174	13	551	84
7B	2	196.12	2146	217	3	116.66	637	91	13	741	115	2	182.11	1466	98	38	1602	102	1	21.9	185	35	2	222	35
7D	1	104.74	408	57	1	41.14	81	2	0	83	19	2	105.31	279	23	6	308	36	3	62.77	81	27	2	110	26
Total	29	3302.45	28644	3757	28	2692.95	11409	1531	183	13123	2175	43	2578.4	16941	1320	351	18612	1319	35	1966.36	5137	1630	169	6936	1011
A	11	1252.59	9424	1312	8	1084.86	3441	550	54	4045	733	21	1038.1	5197	540	101	5838	496	14	693.44	1412	624	59	2095	314
B	10	1635.17	16135	2121	12	1358.62	7408	900	125	8433	1301	12	1205.3	9441	669	207	10317	679	11	1032.05	3418	887	99	4404	599
D	8	414.69	3085	324	8	249.47	560	81	4	645	141	10	335.04	2303	111	43	2457	144	10	240.87	307	119	11	437	98

LG^α: Number of linkage groups in each chromosome.
UP^β: Number of unique positions.

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com