Table 4 Evidence-based and ab initio gene and protein predictions
From: The genome of Diuraphis noxia, a global aphid pest of small grains
Gene modeling software | Prediction method | Transcript/protein predictions | Ave./median protein length | Ave./median transcript length | Longest/shortest transcript | Total number of amino acids | PFAM motifs |
|---|---|---|---|---|---|---|---|
Maker | Ab Initio | 6,452 | 189 / 138 | 576 / 420 | 10,278 / 37 | 1,216,145 | NA |
Ab Initio plus Evidence | 12,645 | 439 / 320 | 1,694 / 1,251 | 29,663 / 66 | 5,548,133 | 27,262 | |
Total | Â | 19,097 | 345 / 241 | 1,316/831 | 29,633/37 | 6,764, 278 | 27,262 |