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Table 2 Statistics of sequence assembly

From: Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance

 

Contigs

Scaffolds

Unigenes

Number of sequences

296,766

273,824

54,526

N50 (bp)

1,548

1,669

957

Mean length (bp)

928

1,012

764

Total length (bp)

275,319,083

277,056,733

41,651,347

  1. The table shows the summary of de novo sequence assembly after using Velvet for contig assembly, Oases for Scaffolds then CDHIT-EST and Transdecoder for the unigenes determination.
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BMC Genomics

ISSN: 1471-2164

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