Table 4 KAAS (KEGG Automatic Annotation Server) analysis of super pathways involving SNP-containing transcripts
From: Transcriptome-enabled marker discovery and mapping of plastochron-related genes in Petunia spp.
Super pathwaysa | Annotation entriesb | Number of genes | Number of SNPs |
|---|---|---|---|
Metabolism | |||
 Amino acid metabolism | 422 | 322 | 1530 |
 Biosynthesis of other secondary metabolites | 157 | 117 | 449 |
 Carbohydrate metabolism | 702 | 449 | 2451 |
 Energy metabolism | 287 | 265 | 1136 |
 Glycan biosynthesis and metabolism | 129 | 95 | 470 |
 Lipid metabolism | 340 | 242 | 285 |
 Metabolism of cofactors and vitamins | 185 | 185 | 748 |
 Metabolism of other amino acids | 135 | 122 | 547 |
 Metabolism of terpenoids and polyketides | 135 | 134 | 630 |
 Nucleotide metabolism | 193 | 139 | 719 |
 Xenobiotics biodegradation and metabolism | 79 | 44 | 199 |
Genetic Information Processing | |||
 Folding, sorting and degradation | 455 | 418 | 2289 |
 Replication and repair | 240 | 139 | 914 |
 Transcription | 212 | 212 | 1289 |
 Translation | 492 | 458 | 2432 |
Environmental Information Processing | |||
 Membrane transport | 23 | 23 | 189 |
 Signal transduction | 970 | 504 | 2719 |
 Signaling molecules and interaction | 3 | 3 | 35 |
Cellular Processes | |||
 Cellular community | 118 | 63 | 373 |
 Cell growth and death | 351 | 204 | 1202 |
 Cell motility | 60 | 60 | 339 |
 Transport and catabolism | 288 | 266 | 1535 |
Organismal System | |||
 Development | 72 | 36 | 135 |
 Immune system | 324 | 158 | 811 |
 Environmental adaptation | 183 | 179 | 971 |