Table 2 Examples of candidate genes within LD blocks associated with absolute flowering time (BOF-ABS) and relative flowering time (BOF-REL)
Trait | Chromosome | Marker at association peak | -loglO(p) | Candidate gene | Gene description | distance [kbp] |
|---|---|---|---|---|---|---|
BOF-ABS | chrA02 | Bn-A05-p9078281 | 5.55 | BnaA02g20680D | luminidependens | 10.79 |
BOF-REL | Â | Bn-A02-p20678898 | 5.27 | 138.89 | ||
BOF-ABS | Â | Bn-A05-p9078281 | 5.55 | BnaA02g22450D | SET DOMAIN PROTEIN 18 | 413.00 |
BOF-ABS | Â | Bn-A05-p9078281 | 5.55 | BnaA02g27250D | SEPALLATA 4 | 68.37 |
BOF-REL | Â | Bn-A02-p20678898 | 5.27 | 68.37 | ||
BOF-REL | chrA03 | Bn-A03-p6710651 | 4.46 | BnaA03gl3320D | frigida | 0.63 |
BOF-ABS | Â | Bn-A03-p21357849 | 3.13 | BnaA03g40220D | protein agamous like 71 | 28.50 |
BOF-ABS | chrAO8 | Bn-A08-p7018554 | 3.24 | BnaA08g06080D | NUCLEAR FACTORY SUBUNIT A8 | 23.74 |
BOF-ABS | chrA09 | Bn-A01-p9004629 | 5.82 | BnaA09g05410D | AGAMOUS LIKE 32 | 61.46 |
BOF-ABS | Â | Bn-A01-p9004629 | 5.82 | BnaA09g05500D | FRUITFULL | 41.26 |
BOF-ABS | Â | Bn-A01-p9004629 | 5.82 | BnaA09g05570D | glycine rich rna binding protein 3 | 66.08 |
BOF-ABS | Â | Bn-A01-p9004629 | 5.82 | BnaA09g05900D | FOREVER YOUNG FLOWER | 199.43 |
BOF-ABS | Â | Bn-A09-p33006858 | 3.03 | BnaA09g44920D | NUCLEAR FACTOR Y SUBUNIT AS | 9.89 |
BOF-ABS | chrA10 | Bn-A10-p9065520 | 3.51 | BnaA10gl2840D | HISTONE H2A 6 | 3.08 |
BOF-ABS | Â | Bn-A10-p9065520 | 3.51 | BnaA10gl2870D | HI STONE HTB4 | 4.47 |
BOF-REL | chrC0l | Bn-scaff_15838_5-p329539 | 4.25 | BnaC01g05930D | transcriptional corepressor leunig | 4.65 |
BOF-REL | Â | Bn-scaff_16874_2-p29251 | 4.01 | BnaC01gl7380D | gibberellin 20-oxidase | 372.20 |
BOF-REL | Â | Bn-scaff_16874_2-p29251 | 4.01 | BnaC01gl7400D | protein agamous-like 71 | 350.53 |
BOF-REL | Â | Bn-scaff_16874_2-p29251 | 4.01 | BnaC01gl7410D | FLOWERING WAGENINGEN | 272.47 |
BOF-REL | chrC02 | Bn-A05-p8798628 | 3.69 | BnaC02g27000D | luminidependens | 1006.78 |
BOF-REL | chrC03 | Bn-scaff_28774_l-p25229 | 3.51 | BnaC03gl5810D | protein agamous-like 71 | 3.14 |
BOF-REL | Â | Bn-scaff_28774_l-p25229 | 3.51 | BnaC03gl5820D | protein agamous-like 71 | 10.97 |
BOF-REL | Â | Bn-scaff_28774_l-p25229 | 3.51 | BnaC03gl5830D | protein agamous-like 42 | 21.08 |
BOF-ABS | Â | Bn-scaff 17044Â l-p526219 | 3.41 | BnaC03g48540D | BTB AND TAZ DOMAIN PROTEIN 4 | 9.39 |
BOF-ABS | Â | Bn-scaff 16182Â l-p296671 | 3.56 | BnaC03g62970D | AGAMOUS | 287.72 |
BOF-ABS | Â | Bn-scaff 16182Â l-p296671 | 3.56 | BnaC03g64560D | terminal flowering 1 protein 1 | 143.12 |
BOF-ABS | chrC05 | Bn-scaff 17869Â l-p926723 | 3.37 | BnaC05g21200D | SEPALLATA3 | 26.50 |
BOF-REL | chrC06 | Bn-scaff _17799_l-p2161244 | 3.76 | BnaC06g35180D | glycine-rich rna-binding protein 5 | 52.75 |
BOF-REL | chrC08 | Bn-scaff _16361_l-pl466598 | 3.45 | BnaC08g28320D | agamous-like mads-box protein agl18 | 10.94 |
BOF-REL | Â | Bn-scaff _16361_l-p2115007 | 5.58 | BnaC08g29520D | shatterproof1 | 41.99 |
BOF-REL | Â | Bn-scaff _16361_l-p2115007 | 5.58 | BnaC08g29530D | shatterproof1 | 52.09 |
BOF-REL | chrC09 | Bn-scaff _17799_l-p3049743 | 3.57 | BnaC09g34850D | sensitivity to red light reduced protein | 848.30 |
BOF-REL | Â | Bn-scaff _17799_l-p3049743 | 3.57 | BnaC09g35410D | pseudo-response regulators | 375.12 |
BOF-REL | Â | Bn-scaff _17799_l-p3049743 | 3.57 | BnaC09g35430D | ap2-like ethylene-responsive transcription factor toe2 | 357.37 |