Table 5 Copy numbers and gene names of CNVRs present in 5 or more individuals
From: Genomic population structure and prevalence of copy number variations in South African Nguni cattle
CNVR | CNa | Total | GEN | |||
|---|---|---|---|---|---|---|
0 | 1 | 3 | 4 | |||
chr17:73713062-74998349 | Â | 8 | 13 | Â | 21 | CHCHD10 IGLL1 LOC527441 SLC5A1 VPREB3 ZNF280A ZNF280B ZNF70 DERL3 GSTT1 GSTT3 GSTT4 MIF SLC2A11 SMARCB1 DDT GGT1 GGT5 SUSD2 C17H22orf13 LOC531152 MIR2323 RTDR1 SNRPD3 SPECC1L UPB1 |
chr1:104798012-105264358 | Â | 16 | 1 | Â | 17 | SI |
chr24:28154039-28497174 | Â | 13 | 3 | Â | 16 | CDH2 |
chr7:75305297-75370366 | 1 | 8 | 5 | Â | 14 | GABRG2 |
chr5:3260057-3434356 | Â | 7 | 4 | 2 | 13 | ATXN7L3B |
chr6:43037439-43089739 | 12 | 1 | Â | Â | 13 | GBA3 |
chr19:49657396-49784054 | Â | 10 | 2 | Â | 12 | LYAR NSG1 OTOP1 STX18 TMEM128 WDR1 ZBTB49 |
chr6:108998175-109951981 | Â | 5 | 7 | Â | 12 | NOT_FOUND |
chr9:3651455-4439872 | Â | 10 | 1 | 1 | 12 | PECAM1 POLG2 |
chr1:32509969-32781614 | 1 | 7 | 3 | Â | 11 | Â |
chr6:71910076-72118486 | Â | Â | 11 | Â | 11 | CHIC2 |
chr28:21101833-21762976 | Â | 5 | 5 | Â | 10 | CTNNA3 |
chr22:59487979-60960603 | Â | 8 | 1 | Â | 9 | Â |
chr6:53514737-53692295 | Â | 9 | Â | Â | 9 | ACAD9 C22H3orf37 CNBP COPG1 EFCC1 GATA2 ISY1 MIR2374 RAB7A RPN1 EFCC1 IQSEC1 ISY1 CHCHD4 HDAC11 NUP210 TMEM43 WNT7A XPC |
chr14:54875898-55141942 | Â | Â | 8 | Â | 8 | ANGPT1 |
chr25:41191025-42687812 | Â | 5 | 3 | Â | 8 | BRAT1 CARD11 GNA12 GRIFIN LFNG MIR2390 MIR2890 |