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Table 1 Candidate temperature-responsive genes

From: RNA-seq analysis of the gonadal transcriptome during Alligator mississippiensis temperature-dependent sex determination and differentiation

Day 0 – Day 3 MPT: MPT dimorphic (up-regulated)

Description

RefSeq Accession No.

Log2(FC)

FDR

Primary ontology

 Uncoupling protein 2 (mitochondrial, proton carrier)

XM_006257947.1

1.47

2.63E-03

P: liver regeneration

 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5

XM_006262802.1

1.46

2.63E-03

C: Golgi membrane

 Eukaryotic translation initiation factor 4A2

XM_006262029.1

1.18

2.63E-03

F: translation initiation factor activity

 Uroplakin 3A

XM_006265339.1

1.09

2.63E-03

C: integral to membrane

 Low-density lipoprotein receptor-related protein 1-like

XM_006265415.1

1.09

2.63E-03

P: lipoprotein transport

 Acyl-coenzyme A synthetase ACSM4, mitochondrial-like

XM_006273705.1

1.01

2.63E-03

F: catalytic activity

 Solute carrier family 1 (glutamate/neutral amino acid transporter), member 4

XM_006264916.1

0.97

2.63E-03

P: proline transmembrane transport

 Transient receptor potential cation channel, subfamily C, member 4 associated protein

XM_006258376.1

0.91

2.63E-03

C: Cul4A-RING ubiquitin ligase complex

 CCAAT/enhancer binding protein (C/EBP), alpha

XM_006274301.1

0.90

2.63E-03

P: regulation of cell proliferation

 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like

XM_006273834.1

0.86

2.63E-03

F: ligase activity

 Myosin XVIIIB

XM_006261765.1

0.86

2.63E-03

C: nucleolus

 Chromosome unknown open reading frame, human C1orf63

XM_006276772.1

0.80

2.63E-03

N/A

 Interferon-related developmental regulator 1, transcript variant X2

XM_006278568.1

0.69

2.63E-03

P: myoblast fate determination

 Espin-like

XM_006276123.1

0.65

2.63E-03

N/A

 Prenylcysteine oxidase 1

XM_006268735.1

0.62

9.85E-03

C: lysosome

 Formimidoyltransferase cyclodeaminase

XM_006260991.1

0.57

6.57E-03

C: cytosol

 Uncharacterized LOC102563416

XR_363102.1

infinite

4.73E-03

C: cytosol

Day 0 – Day 3 MPT: FPT dimorphic (down-regulated)

Description

RefSeq Accession No.

Log2(FC)

FDR

Primary Ontology

 Lysine (K)-specific demethylase 6B

XM_006271864.1

-1.42

2.63E-03

P: positive regulation of transcription from RNA polymerase II promoter

 Protein Jumonji-like

XM_006270621.1

-1.32

2.63E-03

P: negative regulation of transcription from RNA polymerase II promoter

 Protein Jumonji-like

XM_006270617.1

-1.32

2.63E-03

P: negative regulation of transcription from RNA polymerase II promoter

 Cysteine and glycine-rich protein 2

XM_006269901.1

-1.31

2.63E-03

P: multicellular organismal development

 Myeloid protein 1-like

XM_006275897.1

-1.30

2.63E-03

P: granulocyte differentiation

 Protease, serine, 35

XM_006258407.1

-1.24

2.63E-03

C: extracellular region

 ADAM metallopeptidase with thrombospondin type 1 motif, 15

XM_006262089.1

-1.24

2.63E-03

F: metalloendopeptidase activity

 Cellular retinoic acid binding protein 2

XM_006275867.1

-1.18

2.63E-03

F: retinoic acid binding

 Angiopoietin-like 1, transcript variant X2

XM_006267260.1

-1.18

2.63E-03

C: extracellular space

 Transgelin

XM_006278069.1

-1.14

2.63E-03

F: protein binding, bridging

 Dimethylaniline monooxygenase [N-oxide-forming] 3-like

XM_006259136.1

-1.06

2.63E-03

C: endoplasmic reticulum membrane

 Elastin

XM_006267934.1

-1.05

2.63E-03

N/A

 Uncharacterized LOC102575456, transcript variant X1

XR_363216.1

-1.03

2.63E-03

N/A

 Hematopoietic prostaglandin D synthase

XM_006265263.1

-1.01

4.73E-03

C: cytoplasm

 Hemoglobin subunit epsilon-like

XM_006259088.1

-0.95

2.63E-03

P: oxygen transport

 Matrix-remodelling associated 5

XM_006277556.1

-0.94

2.63E-03

C: extracellular region

 Epidermal retinol dehydrogenase 2-like

XM_006277024.1

-0.90

8.24E-03

P: retinal metabolic process

 v-myb avian myeloblastosis viral oncogene homolog-like 2

XM_006276553.1

-0.82

2.63E-03

P: spindle assembly involved in mitosis

 Protein Wnt-11-like, transcript variant X2

XM_006265079.1

-0.76

4.73E-03

P: positive regulation of apoptotic process

 Thrombospondin 2, transcript variant X1

XM_006277394.1

-0.73

2.63E-03

C: basement membrane

 Protein NEL-like

XM_006272242.1

-0.66

2.63E-03

F: kinase activity

 Platelet-derived growth factor D-like

XM_006268644.1

-0.63

4.73E-03

P: regulation of peptidyl-tyrosine phosphorylation

 RAS-like, family 11, member B

XM_006261252.1

-0.63

6.57E-03

P: small GTPase mediated signal transduction

 Ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase)

XM_006258484.1

-0.58

4.73E-03

F:cysteine-type endopeptidase activity