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Table 6 Top five significant hits, if any, of selected Cmap queries across microarray platforms and species

From: Fish connectivity mapping: linking chemical stressors by their mechanisms of action-driven transcriptomic profiles

Signatures

1st match

2nd match

3rd match

4th match

5th match

 

From ZF 21K to ZF 43K (p-value = 0.026; signature size average = 181, min = 15, max = 375)

EE2_30ngL_M_Brain_48hr.sig.500.IDswap

LIN_Embryo

PRO_F_Brain

LIN_Embryo

E2_M_Liver

FLU_Ovary

EE2_30ngL_M_Liver_48hr.sig.500.IDswap

E2_M_Liver

RDX_fry

RDX_fry

RDX_fry

PKC412_fish

EE2_30ngL_M_Testis_48hr.sig.500.IDswap

GEN_Embryo

BPA_Ovary

BPA_Embryo

BPA_Ovary

DBT_Embryo

FLU_Ovary_48hr.sig.500.IDswap

FLU_Embryo

PKC412_fish

BPA_Ovary

PPL_Embryo

RDX_fry

FLU_Testis_48hr.sig.500.IDswap

LIN_Embryo

LIN_Embryo

FLU_F_Ovary

PKC412_fish

FLU_Embryo

PRO_F_Brain_48hr.sig.500.IDswap

E2_M_Liver

PRO_F_Brain

GEN_Embryo

FLU_Embryo

PRO_Ovary

PRO_Ovary_48hr.sig.500.IDswap

PRO_Ovary

FLU_Ovary

PRO_F_Brain

  

PRO_Testis_48hr.sig.500.IDswap

E2_M_Liver

PRO_Ovary*

PRO_F_Brain*

  
 

From ZF 43K to ZF 21K (p-value = 0.022; signature size average = 134, min = 5, max = 310)

E2_1uM_Embryo_4dpf.sig.500.IDswap

EE2_Testis

EE2_M_Liver

TRB_F_Liver

O2_Testis

O2_Ovary

E2_5ugL_M_Liver_4hrs.sig.500.IDswap

EE2_M_Liver

TRB_F_Liver

O2_Testis

O2_Testis

TCDD_Embryo

PRO_2mgL_Embryo_48hr.sig.500.IDswap

DMB_Embryo

tBHQ_Embryo

TRB_F_Brain

PRO_F_Brain

EE2_M_Liver

 

From ZF 21K to FHM 15K (p-value = 0.0076; signature size average = 124, min = 9, max = 257)

EE2_30ngL_Ovary_96hr.sig.500.IDswap

FAD_Ovary

EE2_M_Brain

EE2_M_Brain*

  

EE2_30ngL_M_Liver_48hr.sig.500.IDswap

EE2_Liver

RochDS_liver

PHE_Liver

RochUS_liver

Stream_Liver

EE2_30ngL_Testis_48hr.sig.500.IDswap

PFCs_Liver

KTC_Ovary

PFCs_High_Liver

RochEFF_liver

 
 

From FHM 15K to ZF 21K (p- value = 0.022; signature size average = 110, min = 5, max = 272)

DES_100ngL_Liver_96h.sig.500.IDswap

EE2_M_Liver

DNP_Embryo

DMB_Embryo

TCDD_Embryo

APM_Embryo

E2a_4ugL_M_Liver_14d.sig.500.IDswap

EE2_M_Liver

KET_F_Liver

DNP_Embryo

KET_M_Liver

TRI_Ovary

EE2_25ngL_Liver_72h.sig.500.IDswap

EE2_M_Liver

KET_M_Liver

KET_F_Liver

TRB_F_Liver

FLU_M_Testis

 

From ZF 43K to FHM 15K (p-value = 0.0076; signature size average = 120, min = 6, max = 274)

E2_M_Liver_4hrs.sig.500.IDswap

ElyEFF_liver

ElyDS_liver

PHE_Liver

E2_M_Liver

DES_Liver

GEN_Embryo_48hr.sig.500.IDswap

PFCs_Blood

KTC_Ovary

BIF_Larvae

E2_M_Liver

PER_Larvae

 

From FHM 15K to ZF 43K (p-value = 0.026; signature size average = 139, min = 5, max = 363)

DES_1ngL_Liver_96h.sig.500.IDswap

E2_M_Liver

    

E2_4ugL_M_Liver_14d.sig.500.IDswap

E2_M_Liver

PKC412_fish

BPA_Embryo

GEN_Embryo

BPA_Embryo

EE2_25ngL_Liver_72h.sig.500.IDswap

E2_M_Liver

PKC412_fish

LIN_Embryo

BPA_Embryo

BDE_Embryo

  1. Where similar signatures exist for a condition, only one of them is listed. ROGL hits are ranked by their adjusted connectivity scores and filtered by a p-value cutoff of 1/(number of sets of ROGLs). Informative connections, defined as a signature and one of its top five ROGL hits sharing the same or similar class of chemicals, are highlighted in bold. “*”, p-values slightly greater than the cutoffs