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Table 3 Statistics of DGE sequencing

From: Identification and expression analysis of genes related to calyx persistence in Korla fragrant pear

Sample

Raw Reads

Clean Reads

Clean Bases

Error (%)

Q20 (%)

Q30 (%)

GC Content (%)

SC_ep

12343471

12283115

0.61G

0.01

99.21

97.67

46.89

SC_zf

10138431

10084701

0.5G

0.01

99.2

97.62

46.98

TL_ep

9486992

9449491

0.47G

0.01

99.24

97.74

46.69

TL_zf

10139423

9999449

0.5G

0.01

99.22

97.7

46.79

  1. Clean reads: The number of reads after removing low-quality sequences. The subsequent analysis is based on clean reads. Error rate: Base error rate. Q20 and Q30, the percentage of bases with Phred values >20 and >30, respectively. GC content: the GC ratio of the total base number
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BMC Genomics

ISSN: 1471-2164

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