Fig. 6
From: MBDDiff: an R package designed specifically for processing MBDcap-seq datasets
Apply MBDDiff to prostate cancer datasets. (a) Density plot of GC content grouped by different levels of methylation for all 100Â bp windows across the whole genome of one example prostate MET sample; (b) Distribution of background noise and promoter counts; (c) 3D PCA plot of sample relation. C indicates NED patients and T indicates MET patients; (d) Heatmap of selected promoters for 5 prostate cancer samples