Table 1 Statistics for de novo assemblies using simulated monkeypox reads
From: Finishing monkeypox genomes from short reads: assembly analysis and a neural network method
Read length: 100 | Read length: 250 | |||||
|---|---|---|---|---|---|---|
Total Reads | Coverage | Contigs Numbers | Longest Contig (bp) | Coverage | Contigs Numbers | Longest Contig (bp) |
20M | 9760X | 7 | 127K | 24971X | 4 | 135K |
12M | 6085X | 2 | 183K | 15213X | 25 | 159K |
7.5M | 3803X | 5 | 159K | 8523X | 31 | 169K |
2M | 910X | 4 | 159K | 2535X | 4 | 184K |
1M | 450X | 5 | 161K | 1280X | 4 | 168K |
100K | 50X | 5 | 159K | 127X | 4 | 186K |
50K | 25X | 7 | 142K | 63X | 1 | 189K |
10K | 5X | 108 | 4K | 12X | 6 | 95K |