Table 1 Overview of DE genes including probe IDs, gene symbol, accession number, description, log fold change and significance
| Â | Annotation probe ID | Gene symbol | Accession number | Gene descriptiona | Microarray | |
|---|---|---|---|---|---|---|
Log FC | Adj p-value | |||||
Up-regulated in Pasture-fed group | Bt.21113.1.S1_a_at | CPT1B | NM_001034349 | carnitine palmitoyltransferase 1B (muscle) | −0.65 | 0.02 |
Bt.17513.1.A1_at | PLIN5 | NM_001101136 | perilipin 5 | −1.11 | 0.03 | |
Bt.2359.1.A1_at | FYN | NM_001077972 | oncogene related to SRC, FGR, YES | −0.79 | 0.01 | |
Bt.19423.2.S1_at | ABCA1 | NM_001024693 | ATP-binding cassette, sub-family A (ABC1), member 1 | −1.12 | 0.05 | |
Bt.16916.3.S1_at | KLF11 | XM_868832 | Kruppel-like factor 11 | −1.12 | 0.002 | |
Bt.22869.1.S2_at | FABP5 | NM_174315 | fatty acid binding protein 5 (psoriasis-associated) | −0.76 | 0.02 | |
Bt.1739.2.S1_at | FZD4 | NM_001077972 | frizzled family receptor 4 | −0.62 | 0.03 | |
Bt.4757.1.S1_at | ARHGDIB | NM_175797 | Rho GDP dissociation inhibitor beta | −0.44 | 0.04 | |
Bt.5389.1.S1_at | EIF4EBP1 | NM_001077893 | eukaryotic translation initiation factor 4E binding protein 1 | −0.79 | 0.05 | |
Bt.9585.1.S1_at | ALAD | NM_001014895 | aminolevulinate dehydratase | −1.03 | 0.03 | |
Bt.1035.1.S1_a_at | FCGRT | NM_176657 | Fc fragment of IgG, receptor, transporter, alpha | −0.96 | 0.01 | |
Bt.6936.1.S1_at | CCL14 | NM_001046585 | chemokine (C-C motif) ligand 14 | −0.62 | 0.03 | |
Bt.19795.1.S1_at | BREH1 | NM_001012287 | retinyl ester hydrolase type 1 precursor | −0.57 | 0.03 | |
Bt.6434.2.S1_at | RNF149 | XM_582694 | ring finger protein 149 | −0.52 | 0.03 | |
Bt.19850.2.S1_at | ACSL3 | XM_001787476 | long-chain-fatty-acid--CoA ligase 3 | −0.44 | 0.03 | |
Bt.26962.1.S1_at | GPIHBP1 | XM_590408 | glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 | −0.41 | 0.05 | |
Down-regulated in Pasture-fed group | Bt.6394.1.A1_at | STK40 | NM_001075727 | serine/threonine kinase 40 | 0.42 | 0.03 |
Bt.2392.1.S1_at | ST6GALNAC4 | NM_205791.1 | ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 | 0.71 | 0.03 | |
Bt.20458.1.S1_at | MAP7D1 | XM_589552 | MAP7 domain containing 1 | 0.60 | 0.02 | |
Bt.7393.1.S1_at | NPNT1 | XM_002688090.3 | nephronectin | 1.07 | 0.03 | |
Bt.11038.1.S1_at | TULP1 | XM_865044 | tubby like protein 1 | 0.46 | 0.002 | |
Bt.3562.1.S1_at | LDLR | NM_001166530 | low density lipoprotein receptor | 0.46 | 0.03 | |
Bt.23212.1.S1_at | MSMO1 | NM_001098863.1 | methylsterol monooxygenase 1 | 0.34 | 0.05 | |
Bt.4688.1.S1_a_at | TPCN1 | XM_588037 | two pore segment channel 1 | 0.36 | 0.03 | |
Bt.13526.1.S1_at | PDP2 | NM_001206353 | pyruvate dehyrogenase phosphatase catalytic subunit | 0.40 | 0.03 | |
Bt.16265.1.S1_at | EML1 | XM_590509 | echinoderm microtubule associated protein like 1 | 0.42 | 0.03 | |