Table 1 Four molecular profiles datasets for tumor and cell lines comparison in breast cancer
From: Comprehensive comparison of molecular portraits between cell lines and tumors in breast cancer
Data types | Sources | Platforms | Samples size |
|---|---|---|---|
Copy number variation | TCGA;CCLE | Affymatrix SNP 6.0 | 1033; 59 |
Mutation (Exome Sequencing) | TCGA;CCLE | Illumina GAIIx | 967; 51 |
Gene expression | TCGA; GEO; CCLE | AgilentG4502A_07_3 (TCGA); Affymatrix HU133 Plus 2.0 (GEO; CCLE) | 530; 279; 58 |
Protein | TCGA; CCLE | RPPA | 197; 38 |