Table 2 Details of non-synonymous SNPs that differentiate genes from GA120R1B3 (RKN resistant) and Acala Maxxa (susceptible) lines in the QTL region flank by Gorai.005G026300 and Gorai.005G032200

Gorai.005G026500

2345728

+

T

T

G

F

F

L

CDS

PF08263,PF00560,PF13855

receptor like protein 7

Gorai.005G027700

2415658

-

T

T

G

.

.

.

3-UTR

PF02826,PF05221

S-adenosyl-L-homocysteine hydrolase

Gorai.005G028100

2458792

-

T

T

C

.

.

.

3-UTR

PF00076

glycine-rich RNA-binding protein 2

Gorai.005G028100

2459025

-

A

A

G

.

.

.

3-UTR

PF00076

glycine-rich RNA-binding protein 2

Gorai.005G028100

2460937

-

A

A

T

.

.

.

5-UTR

PF00076

glycine-rich RNA-binding protein 2

Gorai.005G028500

2499549

+

C

C

T

.

.

.

3-UTR

PF05653

Protein of unknown function (DUF803)

Gorai.005G028600

2502813

+

T

T

A

S

S

R

CDS

PF08263,PF00560,PF13855

receptor like protein 7

Gorai.005G028600

2502817

+

G

G

A

D

D

N

CDS

PF08263,PF00560,PF13855

receptor like protein 7

Gorai.005G029200

2599856

+

G

G

T

K

K

N

CDS

PF08263,PF13855

receptor like protein 6

Gorai.005G029200

2599857

+

A

A

T

I

I

F

CDS

PF08263,PF13855

receptor like protein 6

Gorai.005G029400

2632994

+

T

T

C

V

V

A

CDS

PF08263,PF13855

receptor like protein 6

Gorai.005G029400

2634053

+

G

G

C

S

S

T

CDS

PF08263,PF13855

receptor like protein 6

Gorai.005G029600

2657576

+

G

G

A

A

A

A

CDS

PF00119

ATPase, F0 complex, subunit A protein

Gorai.005G029600

2657842

+

G

G

A

R

R

Q

CDS

PF00119

ATPase, F0 complex, subunit A protein

Gorai.005G030200

2695818

-

T

T

A

.

.

.

3-UTR

PF01564,PF08241

S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Gorai.005G030800

2750823

-

G

G

A

.

.

.

5-UTR

PF05856

protein binding

Gorai.005G031000

2760819

+

C

C

T

.

.

.

5-UTR

PF02892,PF02902,PF05699

BED zinc finger ;hAT family dimerisation domain

Gorai.005G031000

2761040

+

A

A

C

.

.

.

5-UTR

PF02892,PF02902,PF05699

BED zinc finger ;hAT family dimerisation domain

Gorai.005G031000

2761073

+

A

A

G

.

.

.

5-UTR

PF02892,PF02902,PF05699

BED zinc finger ;hAT family dimerisation domain

Gorai.005G031000

2761385

+

C

C

A

R

R

S

CDS

PF02892,PF02902,PF05699

BED zinc finger ;hAT family dimerisation domain

Gorai.005G031000

2761993

+

G

G

C

K

K

N

CDS

PF02892,PF02902,PF05699

BED zinc finger ;hAT family dimerisation domain

Gorai.005G031000

2761995

+

C

C

G

T

T

S

CDS

PF02892,PF02902,PF05699

BED zinc finger ;hAT family dimerisation domain

Gorai.005G031000

2762049

+

A

A

G

E

E

G

CDS

PF02892,PF02902,PF05699

BED zinc finger ;hAT family dimerisation domain

Gorai.005G031000

2768718

+

A

A

G

N

N

D

CDS

PF02892,PF02902,PF05699

BED zinc finger ;hAT family dimerisation domain

Gorai.005G031000

2768729

+

A

A

T

P

P

P

CDS

PF02892,PF02902,PF05699

BED zinc finger ;hAT family dimerisation domain