Fig. 2

Evaluation of GBS library coverage and SNVs. a The number of positions with ≥20X coverage; b Total contiguous fragments with >20X coverage; c Distance between each GBS fragment and nearest predicted cut site for the BglII libraries (all fragments > 400 bp are grouped into a single bin); d Distance between each GBS fragment and the nearest predicted cut site for PstI libraries; e Distance between high MAF (> 0.25) SNVs in BglII; f Distance between high MAF SNVs in PstI; g Total SNVs detected per enzyme, and h total SNVs with MAF > 0.25