Genome-wide identification and characterization of the NF-Y gene family in grape (vitis vinifera L.)

Ren, Chong; Zhang, Zhan; Wang, Yi; Li, Shaohua; Liang, Zhenchang

doi:10.1186/s12864-016-2989-3

BMC Genomics

Table 1 NF-Y transcription factors in grape

From: Genome-wide identification and characterization of the NF-Y gene family in grape (vitis vinifera L.)

Name	Gene ID	Best match in Arabidopsis	Chr.	Strand	Genomic (bp)	No. of aa	pI
NF-YA Subunit
NF-YA1	GSVIVT01036936001	At1g31420	2	+	51220	1611	8.89
NF-YA2	GSVIVT01025252001	At5g12840, AtNF-YA1	6	+	7100	306	6.49
NF-YA3	GSVIVT01033313001	At3g20910, AtNF-YA9	8	+	5639	354	8.67
NF-YA4	GSVIVT01022601001	At5g06510, AtNF-YA10	8	_	8762	309	9.34
NF-YA5	GSVIVT01016790001	At1g72830, AtNF-YA3	9	+	7541	336	9.15
NF-YA6	GSVIVT01021622001	At1g30500, AtNF-YA7	10	+	14679	208	7.17
NF-YA7	GSVIVT01015120001	At3g14020, AtNF-YA6	11	+	2972	310	8.76
NF-YA8	GSVIVT01032101001	At3g20910, AtNF-YA9	13	_	8954	405	9.30
NF-YB Subunit
NF-YB1	GSVIVT01010260001	At1g09030, AtNF-YB4	1	+	459	152	5.78
NF-YB2	GSVIVT01010264001	At1g09030, AtNF-YB4	1	+	459	152	8.87
NF-YB3	GSVIVT01017741001	At2g47810, AtNF-YB5	5	_	417	138	5.16
NF-YB4	GSVIVT01036120001	At2g27470, AtNF-YB11	6	+	8280	193	5.59
NF-YB5	GSVIVT01025110001	At3g53340, AtNF-NB10	6	_	2009	133	6.83
NF-YB6	GSVIVT01022214001	At5g64950	7	+	876	291	9.07
NF-YB7	GSVIVT01010959001	At2g47810, AtNF-YB5	7	+	387	128	6.84
NF-YB8	GSVIVT01025539001	At2g37060, AtNF-YB8	8	+	2436	161	5.81
NF-YB9	GSVIVT01030085001	At4g12730	12	+	7125	482	5.93
NF-YB10	GSVIVT01016347001	At2g37060, AtNF-YB8	13	+	4682	176	6.42
NF-YB11	GSVIVT01031089001	At1g09030, AtNF-YB4	14	+	444	147	6.83
NF-YB12	GSVIVT01008215001	At5g23090, AtNF-YB13	17	_	8526	155	4.62
NF-YB13	GSVIVT01014672001	At5g55660	19	+	11644	1098	6.36
NF-YB14	GSVIVT01014673001	At5g47640, AtNF-YB2	19	+	1711	210	6.44
NF-YB15	GSVIVT01014689001	At5g47670, AtNF-YB6	19	+	1402	209	5.89
NF-YB16	GSVIVT01014690001	At5g47670, AtNF-YB6	19	+	1537	215	5.48
NF-YB17	GSVIVT01004375001	At4g14540, AtNF-YB3	Un	+	1376	114	4.10
NF-YB18	GSVIVT01002895001	At5g47670, AtNF-YB6	Un	_	2458	211	5.91
NF-YC Subunit
NF-YC1	GSVIVT01019784001	At1g54830, AtNF-YC3	2	+	351	116	9.46
NF-YC2	GSVIVT01017901001	At1g08970, AtNF-YC9	5	+	4358	104	9.10
NF-YC3	GSVIVT01025169001	At1g07980, AtNF-YC10	6	+	8437	425	9.72
NF-YC4	GSVIVT01037394001	At3g12480, AtNF-YC11	6	_	8197	301	4.92
NF-YC5	GSVIVT01036581001	At3g12480, AtNF-YC11	13	+	15144	271	9.40
NF-YC6	GSVIVT01030963001	At5g63470, AtNF-YC4	14	_	946	129	6.36
NF-YC7	GSVIVT01008570001	At3g48590, AtNF-YC1	17	_	4379	215	4.95
NF-YC8	GSVIVT01036760001	At1g56170, AtNF-YC2	19	_	1072	114	5.06

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ISSN: 1471-2164

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