From: Large-scale gene co-expression network as a source of functional annotation for cattle genes
Module | # probes | # genes | GO term | Genes in GO terma | p–valueb |
---|---|---|---|---|---|
Turquoise | 2569 | 2050 | system process | 241/652 | 3.30E-31 |
Blue | 806 | 690 | nucleic acid metabolic process | 211/2322 | 6.89E-10 |
Brown | 606 | 526 | organic acid metabolic process | 113/565 | 1.38E-36 |
Yellow | 566 | 521 | RNA processing | 83/455 | 6.26E-26 |
Green | 557 | 471 | RNA metabolic process | 151/2064 | 3.36E-09 |
Red | 519 | 431 | cell cycle process | 117/604 | 4.93E-50 |
Black | 454 | 384 | negative regulation of peptidase activity | 22/129 | 2.76E-07 |
Pink | 348 | 304 | RNA metabolic process | 117/2064 | 7.20E-17 |
Magenta | 292 | 267 | gene expression | 111/2568 | 1.56E-08 |
Purple | 275 | 361 | ribonucleoprotein complex biogenesis | 44/266 | 3.10E-24 |
Green yellow | 271 | 214 | chromatin modification | 26/336 | 3.79E-07 |
Tan | 269 | 225 | anatomical structure morphogenesis | 72/1323 | 9.65E-14 |
Salmon | 239 | 216 | translation | 85/398 | 1.40E-67 |
Cyan | 202 | 181 | oxidation-reduction process | 35/619 | 1.15E-08 |
Midnight blue | 200 | 191 | hydrogen ion transmembrane transport | 14/60 | 1.14E-10 |
Light cyan | 188 | 151 | leukocyte activation | 34/365 | 7.29E-20 |
Grey60 | 184 | 158 | leukocyte activation | 30/365 | 3.28E-13 |
Light green | 169 | 160 | purine ribonucleoside triphosphate metabolic process | 17/133 | 2.08E-09 |
Light yellow | 165 | 149 | sterol biosynthetic process | 15/31 | 2.21E-18 |
Royal blue | 164 | 146 | mitochondrial translation | 8/43 | 9.87E-06 |
Dark red | 158 | 139 | proteasomal protein catabolic process | 12/245 | 6.00E-3 |
Dark green | 146 | 128 | response to endoplasmic reticulum stress | 15/146 | 2.23E-09 |
Dark turquoise | 120 | 88 | tricarboxylic acid metabolic process | 3/27 | 5.75E-3 |
Dark grey | 102 | 80 | inflammatory response | 28/269 | 1.40E-23 |
Orange | 98 | 78 | antigen processing and presentation of peptide antigen | 12/26 | 1.00E-18 |
Dark orange | 95 | 85 | regulation of mRNA metabolic process | 3/69 | 1.40E-2 |
White | 80 | 63 | defense response to virus | 15/138 | 4.68E-15 |
Sky blue | 67 | 53 | transcription from RNA polymerase I promoter | 3/32 | 4.91E-4 |
Saddle brown | 62 | 53 | defense response to bacterium | 7/94 | 1.16E-11 |
Steel blue | 61 | 48 | acute inflammatory response | 6/46 | 7.97E-07 |
Pale turquoise | 34 | 24 | L-serine metabolic process | 3/7 | 2.55E-06 |
Violet | 29 | 23 | amino acid activation | 7/36 | 1.84E-12 |