Validation with DNA targets binding to QNK | Validation with DNA targets binding to Zif-268 | |||||
---|---|---|---|---|---|---|
Target DNA 5' - 3' | Kd value | Predicted H-bond Energy Finger 2 (QDK) Jameison et al. 1996 [32] | Predicted H-bond Energy Finger 2 (QDK) Rebar et al. 1994 [33] | ΔG value | Hydrogen bond energy (RERRHRRER) | |
 |  | Pre Minimization | Post Minimization |  |  |  |
GCG TGG GCG | 16 | 1.3 | 6.7 | GCG TGG GCG | 0 | 32 |
GCG TAG GCG | 24 | 1.3 | 5.3 | GCG TAG GCG | 0.5 | 30.9 |
GCG GGG GCG | 142 | 1.3 | 3.4 | GCG GGG GCG | 1.3 | 39.3 |
GCG AGG GCG | 990 | 1.3 | 1.4 | GCG AGG GCG | 1.7 | 44 |
GCG TTG GCG | 7500 | 1.3 | 1.3 | GCG GAG GCG | 1.9 | 37 |
GCG GAG GCG | 250000 | 3.7 | 1.17 | GCG TTG GCG | 1.9 | 62 |