Database (target + decoy) | TD | BP | MB | SepTD | SepBP | SepMB |
---|
6FTTy + 6FTDy
| Total | 1,705 | 3,452 | 2,403 | 2,054 | 4,072 | 2,490 |
Known | 1,697 | 3,407 | 2,385 | 2,053 | 4,071 | 2,489 |
Novel | 8 | 45 | 18 | 1 | 1 | 1 |
6FTTh + 6FTDh
| Total | 1,436 | 3,001 | 1,022 | 2,363 | 3,055 | 2,356 |
Known | 1,413 | 2,959 | 1,005 | 2,348 | 3,044 | 2,352 |
Novel | 23 | 42 | 17 | 15 | 11 | 4 |
SGTh + SGDh
| Total | 3,467 | 6,552 | 2,705 | 3,840 | 6,568 | 3,518 |
Known | 3,433 | 6,526 | 2,680 | 3,836 | 6,562 | 3,511 |
Novel | 34 | 26 | 25 | 4 | 6 | 7 |
- 6FTTy (or 6FTTh): proteogenomic database constructed by 6-frame translation of yeast (or human) genome. 6FTDy (or 6FTDh): decoy database for 6FTTy (or 6FTTh). SGTh: proteogenomic database constructed by splicing information obtained from human RNA sequencing data. SGDh: decoy database for SGTh. TD: target-decoy strategy. BP: target-decoy strategy using a refined score calculated by the self-boosted Percolator. MB: mixture model-based method. SepTD, SepBP, and SepMB denote separate filtering of known and novel peptides using TD, BP, and MB, respectively