Table 1 Trinity assembly summary statistics
From: Improved annotation with de novo transcriptome assembly in four social amoeba species
D. discoideum | P. pallidum | D. fasciculatum a | D. lacteum a | |
|---|---|---|---|---|
Total raw read pairs | 216,284,941 | 206,385,299 | 85,379,416 | 159,455,838 |
Normalised read pairs | 5,278,467 | 8,273,023 | NA | 15,994,900 |
Assembled Statistics | ||||
Total Trinity transcripts | 31,259 | 35,631 | 46,779 | 38,508 |
Transcripts > = 1000 bp | 8,818 | 17,988 | 18,977 | 20,637 |
GC content (%) | 28.1 | 35.7 | 35.6 | 31.2 |
Maximum Transcript Length (bp) | 21,679 | 17,271 | 19,435 | 15,026 |
Stats based on all transcript contigs | ||||
Contig N50 | 1,268 | 1,871 | 2,107 | 2,759 |
Contig E90N50 | 1,423 | 2,069 | 2,424 | 3,341 |
Mean length (bp) | 871 | 1,338 | 1,212 | 1,671 |
Total assembled bases | 27,239,648 | 47,658,623 | 56,707,337 | 64,358,120 |