Table 2 Statistical analyses of transcriptome assembly obtained from drought-stress tolerant and sensitive genotypes
From: Transcriptome analysis of lentil (Lens culinaris Medikus) in response to seedling drought stress
| Â | CT (Control) | DT (Drought stress treatment) | ||
|---|---|---|---|---|
1C | 2C | 1 T | 2 T | |
Number of paired-end reads | 51435338 | 58518476 | 56766344 | 67764324 |
Trimmed reads | 23054590 | 27378757 | 26212097 | 34791064 |
Read Length (bp) | 45806703 | 53918455 | 50000655 | 62520091 |
Total mapped | 23054590 (95.23%) | 27378757 (95.06%) | 26212097 (95.06%) | 34791064 (93.56%) |
Q30 (%) | 86.34 | 88.92 | 85.21 | 88.27 |
GC content (%) | 41.18 | 41.36 | 41.25 | 42.66 |
Gene number | 32247 | 33000 | 33375 | 33920 |
Total number of contigs | 74032 | 75500 | 78328 | 81523 |
Maximum length of contigs | 16502 | 16502 | 16502 | 16502 |
Minimum length of contigs | 201 | 201 | 201 | 201 |
Average contigs length | 1456.25 | 1457.83 | 1430.31 | 1402.86 |
Total length of contigs (bases) | 107809785 | 110066495 | 112033681 | 114366089 |
N50 | 2011 | 2008 | 2000 | 1991 |
Number of proteins | 52565 | 54613 | 54230 | 55667 |