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Table 3 Trinotate results summary for intergenic transcripts

From: Transcriptome analysis of smut fungi reveals widespread intergenic transcription and conserved antisense transcript expression

  

Peptides >30 aa <100 aa

Peptides >100 aa

Fungus

Transcripts detected

Peptidesa

BLASTp hits

SignalP predictions

Peptidesa

BLASTp hits

SignalP predictions

U. maydis (class 'u')

1832

113

13

6

28

12

0

U. maydis (class 'p')

755

21

5

0

11

7

0

U. hordei (class 'u')

898

58

7

0

26

11

3

U. hordei (class 'p')

423

29

2

0

2

0

0

S. reilianum (class 'u')

1331

28

0

0

3

1

0

S. reilianum (class 'p')

490

10

1

1

4

2

1

  1. aOnly peptides with a "complete" open reading frame (methionine-stop codon) and a transcript FPKM > =1 are reported