Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

BMC Genomics

Table 1 Summary of RNAseq data for proliferation experiment

Line	Temp °C	Replicate	PE reads	Median read quality R1	Median read quality R2	Trimmed PE reads	% mapped	% concordant	Estimated insert mean (bp)	Total observed genes	Mean expressed genes	% expressed genes
RBC2	33	A	18492232	37.3	37.2	17160507	90.0	84.3	199	16527	15065	71.7
		B	15688650	37.3	37.2	14526144	89.8	84.0	199	16305	15065	71.7
	38	A	17462871	37.1	36.9	15938819	88.3	81.6	227	16408	14524	69.1
		B	16861464	37.1	36.9	15388173	88.4	81.8	226	16186	14524	69.1
	43	A	12482369	37.1	36.8	11301872	88.4	82.2	194	15864	14241	67.8
		B	16552504	36.9	36.8	15135313	87.3	80.5	199	15864	14241	67.8
F-Line	33	A	15640211	37.2	37.1	14477399	89.7	84.0	199	15734	15091	71.8
		B	15574971	37.2	37.1	14421868	89.6	83.5	199	15814	15091	71.8
	38	A	15615066	37.2	37	14320803	88.5	81.9	218	15343	14586	69.4
		B	16932717	37.1	36.9	15464075	89.1	82.5	226	15365	14586	69.4
	43	A	16624565	37.1	36.8	15156088	89.1	81.9	225	15886	14771	70.3
		B	17476215	37.1	37	16091169	89.2	82.8	198	15874	14771	70.3
Mean			16283652.9	37.14	36.98	14948529.2	88.95	82.58	209.1	15930.8	14713	70.03

For each library the total number of concatenated reads, median read qualities (R1 and R2), estimated mean insert length (bp), number of and percentage of aligned reads, percentage of concordant reads, and the number and percentage of observed genes (mapped reads >1) and expressed genes (mean group normalized read count >3.0) are given

ISSN: 1471-2164