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Fig. 2 | BMC Genomics

Fig. 2

From: Differentially expressed genes from RNA-Seq and functional enrichment results are affected by the choice of single-end versus paired-end reads and stranded versus non-stranded protocols

Fig. 2

Scatterplots of reads assigned to protein coding features and non-coding features. Counts for all protein coding genes features (a, b, e, f, i, j) and for all non-coding features (c, d, g, h, k, l) are compared for the PE data versus the SE data (red) and the PE data using the strand specific protocol with the paired end data using a non-strand specific protocol (NS data, blue). Counts for the paired-end strand specific datasets (PE) are on the x-axis in all cases. Data is shown for sample 1 in Experiment 2 (row 1), sample 1 in Experiment 3 (row 2) and sample 1 in Experiment 4 (row 3)

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BMC Genomics

ISSN: 1471-2164

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