Table 3 Genomic regions associated with the monounsaturated and polyunsaturated fatty acids in Chinese Simmental cattle using BayesB method
FA Trait | Chr | Associated Window | nSNP | rs_ID_start | rs_ID_end | Genetic variance for 100Â kb window | Positional/putative candidate gene | Gene name |
|---|---|---|---|---|---|---|---|---|
C14:1 cis-9 | chr2 | 14700001:14800000 | 24 | rs109872420 | rs42238053 | 0.016989227 | SSFA2 | Bos taurus sperm specific antigen 2 |
chr19 | 51300001:51400000 | 22 | rs41921222 | rs41919992 | 0.064947269 | FASN | Bos taurus fatty acid synthase | |
chr22 | 40200001:40300000 | 50 | rs43704022 | rs134738297 | 0.012042417 | PTPRG | Bos taurus protein tyrosine phosphatase, receptor type, G | |
C16:1 cis-9 | chr5 | 62300001:62400000 | 23 | rs109883934 | rs135394103 | 0.023992534 | Â | Â |
chr14 | 9400001:9500000 | 21 | rs110610151 | rs133268603 | 0.039269923 | TG | Bos taurus thyroglobulin | |
C18:1 cis-9 | chr12 | 76800001:76900000 | 43 | rs42705033 | rs133235260 | 0.013243828 | CLDN10 DZIP1 | Bos taurus claudin 10 Bos taurus DAZ interacting zinc finger protein 1 |
chr14 | 30100001:30200000 | 14 | rs133107941 | rs109885660 | 0.022457664 | Â | Â | |
chr14 | 30300001:30400000 | 27 | rs135047094 | rs41733749 | 0.194380284 | Â | Â | |
C18:2 n-6 | chr4 | 83500001:83600000 | 34 | rs42446310 | rs42501954 | 0.023282701 | LSM8 | Bos taurus LSM8 homolog, U6 small nuclear RNA associated |
chr20 | 23500001:23600000 | 14 | rs109459626 | rs110757204 | 0.049524271 | SLC38A9 | Bos taurus solute carrier family 38 member 9 | |
C18:3 n-3 C20:3 n-3 | chr14 | 30300001:30400000 | 27 | rs135047094 | rs41733749 | 0.028254641 | Â | Â |
chr4 | 83500001:83600000 | 34 | rs42446310 | rs42501954 | 0.010587293 | LSM8 | Bos taurus LSM8 homolog, U6 small nuclear RNA associated | |
chr17 | 68400001:68500000 | 27 | rs110865754 | rs136952413 | 0.017868447 | TFIP11 TPST2 | Bos taurus tuftelin interacting protein 11 Bos taurus tyrosylprotein sulfotransferase 2 | |
C20:5 n-3 | chr3 | 55400001:55500000 | 27 | rs137055781 | rs135699972 | 0.017277515 | Â | Â |
chr5 | 110800001:110900000 | 35 | rs41593844 | rs109225081 | 0.010709916 | CBY1 TOMM22 JOSD1 GTPBP1 SUN2 | Bos taurus chibby homolog 1 (Drosophila). Bos taurus translocase of outer mitochondrial membrane 22 Bos taurus Josephin domain containing 1 Bos taurus GTP binding protein 1 Bos taurus Sad1 and UNC84 domain containing 2 | |
chr12 | 22800001:22900000 | 42 | rs134078558 | rs135218498 | 0.014090239 | LHFP | Bos taurus lipoma HMGIC fusion partner | |
C22:5 n-3 | chr2 | 11700001:11800000 | 31 | rs134430461 | rs109568935 | 0.012031548 | Â | Â |
chr5 | 36200001:36300000 | 20 | rs137189970 | rs134607051 | 0.011137951 | TMEM117 | Bos taurus transmembrane protein 117 | |
chr9 | 47500001:47600000 | 19 | rs137052587 | rs137140432 | 0.024563868 | Â | Â |