Table 1 Salmonella enterica isolates employed in the SNP analysis of this study
Strain | Serovar | Isolation Country | State | Source | Isolation Date | Accession |
|---|---|---|---|---|---|---|
SE163Ac | Typhimuriumb | USA | OH | Turkey diagnostic | 2002 | LSZD00000000 |
SE696Ac | Typhimuriumb | USA | MW | Turkey processing | 2000 | LXHA00000000 |
SE710Ac | Typhimuriumb | USA | ND | Turkey diagnostic | 1992 | LXGZ00000000 |
SE819c | Heidelbergb | USA | MD | Turkey | 2002 | LSZE00000000 |
SE397c | Typhimuriumb | USA | INAa | Chicken carcass | 1999 | LYRR00000000 |
SE452c | Typhimuriumb | USA | INA | Ground turkey | 1999 | LYRS00000000 |
SE478c | Typhimuriumb | USA | INA | Turkey | 1999 | LYRT00000000 |
SESL476 | Heidelberg | USA | MN | Food | 2003 | NC_011083.1 |
SECVM20752 | Heidelberg | USA | NC | Turkey | 2002 | AMNR00000000 |
SE21381 | Heidelberg | USA | CT | Food | 2002 | AMMZ00000000 |
SECVM24359 | Heidelberg | USA | MO | Turkey | 2003 | AMNP00000000 |
SE29169 | Heidelberg | USA | CT | Food | 2003 | APIX00000000 |
SE41563 | Heidelberg | USA | OR | Human | 2011 | AJGX00000000a |
SE41565 | Heidelberg | USA | WA | Food | 2011 | AJHA00000000a |
SE41567 | Heidelberg | USA | WA | Food | 2011 | AMNG00000000 |
SE41573 | Heidelberg | USA | OH | Human | 2011 | AJGY00000000a |
SE41576 | Heidelberg | USA | OH | Human | 2011 | AMNH00000000 |
SE82–2052 | Heidelberg | USA | ME | Human | 1982 | AMMX00000000b |
SEN1536 | Heidelberg | USA | GA | Food | 2004 | AKYN00000000 |
SEN15757 | Heidelberg | USA | GA | Food | 2007 | AMND00000000 |
SEN18393 | Heidelberg | USA | CT | Food | 2008 | AMNF00000000 |
SEN19992 | Heidelberg | USA | CA | Food | 2009 | AMMC00000000 |
SEN26457 | Heidelberg | USA | CO | Food | 2010 | AMNE00000000 |
SEN29341 | Heidelberg | USA | MN | Food | 2011 | AMNJ00000000 |
SEN4403 | Heidelberg | USA | CA | Food | 2005 | AMMT00000000 |
SEN4496 | Heidelberg | USA | CO | Food | 2005 | AMMQ00000000 |
SESARA31 | Heidelberg | USA | MD | Swine | 1987 | AMLV00000000 |
SESARA32 | Heidelberg | USA | TX | Dog | 1986 | AMLU00000000 |
SESARA37 | Heidelberg | USA | CO | Turkey | 1987 | AMLR00000000 |
SEN13–01290 | Heidelberg | Canada | Quebec | Food | 2012 | CP012930.1 |
SE12–4374 | Heidelberg | Canada | Quebec | Human | 2012 | CP012924.1 |
SECFSAN002064 | Heidelberg | USA | INA | Human | 2012 | CP005995.1 |
SECFSAN002069 | Heidelberg | USA | WA | Chicken | 2012 | CP005390.2 |
SEB182 | Heidelberg | France | INA | Cattle | INA | CP003416.1 |
SECVM_N41746 | Heidelberg | USA | NY | Food | 2012 | NZ_JYYX01000033.1 |
SECVM_N42472 | Heidelberg | USA | GA | Food | 2012 | NZ_JYZU01000053.1 |
SECVM_N37938 | Heidelberg | USA | NY | Food | 2011 | NZ_JYWR01000049.1 |
SECVM_N30683 | Heidelberg | USA | NM | Food | 2011 | NZ_JYUW01000029.1 |
SET000240 | Typhimurium | Japan | INA | Human | 2000 | AP011957.1 |
SELT2 | Typhimurium | INA | INA | Human | 1940s | NC_003197.1 |
SECFSAN001921 | Typhimurium | INA | INA | Food | INA | CP006048.1 |
SECDC_H2662 | Typhimurium | INA | INA | Human | 1997 | CP014979.1 |
SEUSDA-ARS-USMARC-1808 | Typhimurium | USA | INA | INA | INA | CP014969.1 |
SERM9437 | Typhimurium | USA | CO | Food | 2009 | CP012985.1 |
SESA972816 | Typhimurium | China | INA | Cattle | 2002 | CP007484.1 |
SECDC_2009K-1640 | Typhimurium | USA | INA | Human | 2009 | CP014975.1 |
SECDC_2010K-1587 | Typhimurium | USA | INA | Human | 2006 | CP014965.1 |
EUSDA-ARS-USMARC-1810 | Typhimurium | USA | INA | Cattle | 2005 | CP014982.1 |
EUSDA-ARS-USMARC-1880 | Typhimurium | USA | INA | Cattle | 2003 | CP014981.1 |
SECVM29188 | Kentucky | USA | GA | Food | 2003 | CP001122.1 |
SECDC191 | Kentucky | INA | INA | INA | INA | NZ_ABEI00000000.1 |
SESK222-32B | Kentucky | INA | INA | Food | 2005 | NZ_JUIU00000000.1 |