Table 6 The 25 most highly expressed genes in Mytilisepta virgata mantle rim and representative significantly over-represented annotations by gene set enrichment analysis
Most expressed genes | Over-represented annotations | |||
|---|---|---|---|---|
Annotation | TPM | Term | Class | p-value |
Actin | 40,034.02 | Proteinaceous extracellular matrix | CC | 1.84E-7 |
Elongation factor 1 alpha | 17,159.08 | Extracellular region | CC | 1.87E-7 |
alpha tubulin | 16,259.80 | Chitin binding Peritrophin-A domain | PFAM | 4.58E-7 |
60s ribosomal protein L23 | 15,108.07 | Matrixin | PFAM | 1.14E-6 |
Actin | 15,102.97 | Calcium ion binding | MF | 2.65E-6 |
40S ribosomal protein SA | 11,849.66 | WAP-type (Whey Acidic Protein) ‘four-disulfide core’ | PFAM | 3.65E-6 |
Actin | 11,356.99 | Extracellular matrix structural constituent | MF | 3.66E-6 |
Alpha tubulin | 8547.04 | Immunoglobulin C1-set domain | PFAM | 1.51E-5 |
Ferritin | 7899.68 | Serine-type endopeptidase inhibitor activity | MF | 3.27E-5 |
Myosin | 7382.76 | Collagen catabolic process | BP | 1.09E-4 |
low complexity protein - collagen-like | 6579.48 | Homeobox domain | PFAM | 1.24E-4 |
60s ribosomal protein P0 | 5142.34 | CD80-like C2-set immunoglobulin domain | PFAM | 1.42E-4 |
Beta tubulin | 4972.09 | Metalloendopeptidase activity | MF | 1.58E-4 |
Beta tubulin | 4461.74 | Cell junction | CC | 8.89E-4 |
Superoxide Dismutase | 4220.54 | Cadherin domain | PFAM | 9.51E-4 |
Actin | 4066.75 | Extracellular space | CC | 1.77E-3 |
small heat shock protein 24.1 | 3933.60 | Immunoglobulin V-set domain | PFAM | 3.06E-3 |
Paramyosin | 3898.32 | Basement membrane | CC | 3.57E-3 |
non coding RNA? | 3796.60 | Immunoglobulin I-set domain | PFAM | 7.51E-3 |
non coding RNA? | 3710.19 | Integral component of membrane | CC | 7.74E-3 |
Myosin | 3690.69 | / | / | / |
non coding RNA? | 3538.31 | / | / | / |
Cyclophilin | 3464.80 | / | / | / |
Ribosomal protein S4 | 3459.95 | / | / | / |
Adenine nucleotide translocator | 3431.98 | / | / | / |