Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

Table 1 Statistics of the RNA-Seq data

Samples	Raw reads	Clean reads	Q20 (%)	Q30 (%)	Mapped reads	Expressed unigenes (FPKM > 0.3)
DSXGY_1	47,629,874	4,6917,624	97.18	93.82	38,545,026 (82.29%)	18,619 (53.04%)
DSXGY_2	59,428,164	58,748,388	96.52	91.47	50,102,470 (85.29%)	16,847 (47.99%)
DSXGY_3	49,485,212	48,752,948	97.34	93.42	41,058,330 (84.35%)	18,561 (52.88%)
DSXGA_1	45,287,548	44,616,412	97.01	93.39	33,171,198 (74.36%)	16,406 (45.14%)
DSXGA_2	52,290,920	51,638,726	96.41	91.24	39,759,730 (77.01%)	18,860 (51.89%)
DSXGA_3	66,334,424	65,471,582	96.21	90.78	54,721,096 (83.59%)	18,000 (49.53%)

DSXGY_1–3 and DSXGA_1–3 represent independent biological replicates of G. yamadae and G. asiaticum, respectively. Q20: Percentage of bases with a Phred value >20; Q30: Percentage of bases with a Phred value >30; and Mapped reads: Number and percentage of reads from each date of data trimming that were mapped back onto the assembled transcriptome

ISSN: 1471-2164