Table 2 Validation of DETs from microarray studies in Gossypium arboreum fuzzy-lintless (Fl) and fuzzy linted line (FL) through qRT-PCR
Sl. no. | Gene_ID | Stage | GenBank ID | Closest Arabidopsis homolog | Description | Fold change | Regulation | Log Fold Change to Cal. (ΔRn) | |
|---|---|---|---|---|---|---|---|---|---|
0dpa | 10dpa | ||||||||
Gene 1 | GhiAffx.7054.1.S1_at | 0 dpa | DW509967.1 | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein | 16.50139 | up | 3.33 | −1.67 |
Gene 2 | GhiAffx.2527.1.S1_s_at | 0 dpa | DW497370.1 | AT5G53120.6 | spermidine synthase 3 | 151.1868 | down | −2.67 | −2.41 |
Gene 3 | Ghi.8931.1.S1_a_at | 0 dpa | DT457712 |  | Unknown | 87.72372 | down | −9.95 | −16.8 |
Gene 4 | Ghi.7853.1.S1_at | 0 dpa | AF443118.1 | AT1G01630.1 | Sec14p-like phosphatidylinositol transfer family protein | 5.828306 | down | −8.39 | −2.61 |
Gene 5 | Ghi.7950.1.S1_at | 10 dpa | AY366083.1 | AT5G06720.1 | peroxidase 2 | 81.1664 | down | 0.992 | −18.8 |
Gene 6 | GhiAffx.46297.1.S1_s_at | 10 dpa | AI054544 | AT4G17030.1 | expansin-like B1 | 58.77188 | down | −0.399 | −8.24 |
Gene 7 | Ghi.3370.1.A1_at | 10 dpa | DT463939 | AT1G33590.1 | Leucine-rich repeat (LRR) family protein | 45.29446 | down | −1.52 | −6.53 |
Gene 8 | Ghi.8023.1.S1_at | 10 dpa | DQ116443.1 | AT1G12010.1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | 39.72076 | down | 0.562 | −6.11 |
Gene 10 | GhiAffx.19125.1.A1_at | 10 dpa | DW487672.1 | AT1G12780.1 | UDP-D-glucose/UDP-D-galactose 4-epimerase 1 | 19.17262 | down | 0.292 | −3.89 |
Gene 11 | Ghi.6496.1.S1_a_at | 10 dpa | CD486227 | AT4G02380.1 | senescence-associated gene 21 | 18.63631 | down | −2.12 | −4.02 |
Gene 12 | Ghi.1552.1.S1_s_at | 10 dpa | DN779868 | AT1G47960.1 | cell wall/vacuolar inhibitor of fructosidase 1 | 18.20026 | down | 0.149 | −4.94 |
Gene 13 | Ghi.8448.1.S1_x_at | 10 dpa | AF521240.1 | AT5G12250.1 | beta-6 tubulin | 11.60727 | down | 1.58 | −4.23 |
Gene 14 | Ghi.6088.2.A1_s_at | 10 dpa | DV849489 | AT3G45640.1 | mitogen-activated protein kinase 3 | 10.75481 | down | −1.38 | −4.58 |
Gene 15 | Ghi.5521.1.A1_s_at | 10 dpa | DT047436 | AT5G01210.1 | HXXXD-type acyl-transferase family protein | 8.330377 | down | −0.832 | −2.08 |
Gene 16 | Gra.2314.1.S1_at | 10 dpa | CO126415 | AT3G13750.1 | beta galactosidase 1 | 6.476485 | down | 1.3 | −2.58 |