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Table 2 Enriched functions of DE genes in Down and Up group using IPA (89% grain vs. 72% grain)

From: Transcriptome analysis of ruminal epithelia revealed potential regulatory mechanisms involved in host adaptation to gradual high fermentable dietary transition in beef cattle

Enriched functions

p-Value

Z-score

Molecules

Down group

 Immune response of leukocytes

1.14E-02

−2.2

C3, CXCL8, FCGR2B, IL1B, ISG15

 Attraction of phagocytes

7.33E-05

−2.2

C3, CXCL5, CXCL8, IL1B, VCAN

 Attraction of myeloid cells

5.73E-05

−2.2

C3, CXCL5, CXCL8, IL1B, VCAN

 Cell movement of leukocytes

4.17E-02

−2.0

C3, CXCL5, CXCL8, FOS, IL1B, S100A9, VCAN

 Infection of cells

2.35E-03

−2.0

C2, C3, EIF2AK2, FCGR2B

 Stimulation of leukocytes

1.18E-02

−2.0

C3, CXCL5, CXCL8, IL1B

 Quantity of Ca2+

4.61E-03

−2.0

C3, CXCL8, IL1B, S100A9

 Adhesion of neutrophils

2.42E-03

−2.0

C3, CXCL8, IL1B, S100A9

 Apoptosis of macrophages

3.86E-03

−2.0

EIF2AK2, FOS, IL1B, ISG15

 Activation of granulocytes

5.11E-03

−1.9

C3, CXCL8, FCGR2B, IL1B

 Viral Infection

5.73E-05

−1.9

C2, C3, CXCL8, EGR1, EIF2AK2, FCGR2B, IL1B, MX1, S100A9

 Binding of leukocytes

1.39E-02

−1.8

A2M, C3, CXCL8, FCGR2B, IL1B, S100A9

 Fatty acid metabolism

1.78E-03

−1.8

CXCL8, CYP3A4, FABP4, FCGR2B, IL1B

 Apoptosis of leukocytes

1.14E-02

−1.8

CXCL8, EGR1, EIF2AK2, FCGR2B, FOS, IL1B, ISG15

 Cell death of immune cells

1.78E-03

−1.7

C3, CXCL8, EGR1, EIF2AK2, FABP4, FCGR2B, FOS, IL1B, ISG15, MX1, MYH11

 Degranulation of phagocytes

1.57E-04

−1.7

C3, CXCL8, DUSP1, FCGR2B, FOS, IL1B, S100A9

 Adhesion of immune cells

2.77E-02

−1.6

A2M, C3, CXCL8, IL1B, S100A9

 Binding of professional phagocytic cells

5.75E-03

−1.6

A2M, C3, CXCL8, IL1B, S100A9

 Mobilization of Ca2+

1.14E-02

−1.6

A2M, C3, CXCL8, FCGR2B

 Migration of phagocytes

5.28E-03

−1.6

C3, CXCL5, CXCL8, IL1B, S100A9, VCAN

 Migration of granulocytes

2.35E-03

−1.5

C3, CXCL5, CXCL8, IL1B, S100A9

Up group

 Concentration of lipid

8.12E-02

−2.0

ABCA1, CXCL8, CYP1A1, CYP1B1, S100A9

 Proliferation of epithelial cells

9.40E-02

−1.8

CAV1, CDC25B, CXCL8, EDN1, FLT1, FOS, FRS2, GLI1, KRAS, KRT16, MKI67, NR3C1, ODC1, PTHLH, SULF2

 Recruitment of neutrophils

7.13E-02

−1.6

CAV1, CXCL2, CXCL5, CXCL8, CYP1A1, CYP1B1, EDN1, P2RY2

 Quantity of T lymphocytes

1.15E-01

1.5

ACKR4, BIRC5, CCNB2, CD48, FOS, IL6ST, KRAS, LGALS1, MYH11, MYSM1, NR3C1, PTTG1, TACC3, TGFBR1, TSC1, XIAP

 Differentiation of epithelial cells

7.13E-02

1.7

AURKB, CAV1, DSG1, E2F8, EDN1, GNAQ, KRAS, KRT14, KRT16, PLK1, PTHLH, SH3PXD2A

 Transmigration of myeloid cells

7.13E-02

2.0

CXCL5, CXCL8, ITGAV, LGALS1

 Transmigration of phagocytes

9.78E-02

2.0

CXCL5, CXCL8, ITGAV, LGALS1

 Cell cycle progression

7.13E-02

2.2

BIRC5, CDC25B, CKAP2, FOS, KRAS, LGALS4, MAP3K1, PLK1, XIAP