From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Table 3 Sequence analysis of C. gallinacea MLST alleles for samples denoted in bold in Additional file 1: Table S1

Allele	Total number of mutations (Δnt)	No. of non-synonymous substitutions	No. of synonymous substitutions	N alleles
gatA	0	0	0	1
oppA_3	5	2	3	6
hflX	3	0	3	4
gidA	2	1	1	2
enoA	25	1	24	6
hemN	41	13	28	3
fumC	7	1	6	5
Concatenated (3098 bp)	83	18	65	15

Δnt: No. of polymorphic sites; ^*d_s and d_n: the average number of synonymous substitutions per synonymous site and non- synonymous substitutions per non-synonymous site, respectively (Jukes – Cantor corrected); N Alleles: No. of unique sequences according to the gene

ISSN: 1471-2164