Table 1 Summary of RNA-Seq sequencing and data analysis results
From: Genome and transcriptome of the natural isopropanol producer Clostridium beijerinckii DSM6423
Replicate | Time point (h) | Total read number | Reliable reads | Reads mapped on genomic objects (except rRNA) | Number of genes with detectable expression |
|---|---|---|---|---|---|
A | 3 | 19,158,892 | 17,799,816 | 7,024,274 | 5944 |
B | 3 | 11,574,716 | 10,099,244 | 3,266,941 | 5829 |
C | 3 | 15,203,792 | 12,936,903 | 4,403,183 | 5851 |
A | 6 | 16,007,459 | 14,775,252 | 5,341,913 | 5876 |
B | 6 | 13,731,477 | 11,723,511 | 4,255,219 | 5884 |
C | 6 | 13,472,975 | 11,754,891 | 3,741,547 | 5861 |
A | 9 | 11,050,565 | 9,196,745 | 2,854,832 | 5895 |
B | 9 | 14,381,148 | 12,261,616 | 3,777,589 | 5906 |
C | 9 | 11,873,306 | 10,118,493 | 3,235,171 | 5880 |
A | 11 | 13,663,240 | 11,531,714 | 3,327,568 | 5887 |
B | 11 | 10,195,910 | 8,792,217 | 2,208,510 | 5789 |
C | 11 | 19,046,554 | 16,439,661 | 4,596,207 | 5917 |
A | 24 | 13,578,705 | 11,371,420 | 1,153,741 | 5203 |
B | 24 | 21,453,820 | 17,646,890 | 1,871,469 | 5606 |
C | 24 | 9,805,052 | 8,262,117 | 1,046,981 | 5121 |