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Table 1 Twenty-eight genomic regions displayed regulatory activity in peripheral nerve relevant cells

From: A genome-wide assessment of conserved SNP alleles reveals a panel of regulatory SNPs relevant to the peripheral nerve

Region

Fold-increase

Forwarda

Fold-increase

Reversea

Coordinates (hg18)

rs Number

SC21-10

5.91 (M)

8.10 (C)

0.25 (M)

0.33 (C)

chr21:21,313,182-21,313,188

rs7277262

SC21-12

9.95 (M)

5.34 (M)

chr21:22,535,874-22,535,880

rs2827297

SC21-13

11.42 (S)

1.04 (S)

chr21:27,318,695-27,318,702

rs233616

SC21-16

28.67 (S)

30.17 (C)

2.73 (S)

3.56 (C)

chr21:29,424,534-29,424,540

rs2832203

SC21-18

1.37 (C)

8.90 (C)

chr21:33,139,128-33,139,135

rs2833975

SC21-20

5.81 (S)

5.04 (S)

chr21:33,273,214-33,273,219

rs2834040

SC21-27

16.05 (C)

4.71 (C)

chr21:36,269,198-36,269,214

rs2835196

SC21-33

13.85 (C)

3.40 (C)

chr21:38,940,551-38,940,556

rs16996658

SC21-34

6.22 (C)

0.33 (C)

chr21:38,958,107-38,958,118

rs8130434

SC22-1

2.58 (M)

2.17 (C)

6.68 (M)

6.35 (C)

chr22:16,689,437-16,689,442

rs5992119

SC22-8

1.00 (M)

1.05 (C)

5.73 (M)

7.53 (C)

chr22:25,678,449-25,678,472

rs5761863

SC22-14

4.70 (C)

13.83 (C)

chr22:26,146,779-26,146,784

rs733164

SCX-3

0.20 (S)

3.34 (M)

3.21 (C)

6.97 (S)

13.56 (M)

10.79 (C)

chrX:15,529,186-15,529,192

rs4646115

SCX-4

0.17 (S)

0.67 (M)

0.86 (C)

6.85 (S)

9.25 (M)

8.31 (C)

chrX:17,730,099-17,730,104

rs2187846

SCX-18

14.59 (C)

0.98 (C)

chrX:31,252,044-31,252,049

rs7884417

SCX-20

7.39 (C)

1.59 (C)

chrX:31,435,143-31,435,149

rs3788892

SCX-21

8.63 (S)

25.00 (M)

6.60 (C)

0.18 (S)

0.84 (M)

0.75 (C)

chrX:31,764,702-31,764,707

rs1379871

SCX-33

0.67 (C)

13.92 (C)

chrX:85,443,058-85,443,064

rs6623642

SCX-39

5.84 (S)

0.50 (S)

chrX:86,429,198-86,429,205

rs16980794

SCX-45

0.37 (M)

0.31 (C)

10.62 (M)

5.49 (C)

chrX:92,656,893-92,656,900

rs12687113

SCX-52

0.50 (C)

5.02 (C)

chrX:99,454,087-99,454,093

rs7064056

SCX-58

6.33 (S)

13.83 (M)

14.69 (C)

0.64 (S)

0.93 (M)

1.56 (C)

chrX:121,682,472-121,682,478

rs17273301

SCX-60

0.43 (S)

0.41 (M)

0.50 (C)

5.73 (S)

21.81 (M)

8.86 (C)

chrX:123,382,405-123,382,410

rs2076164

SCX-63

21.68 (M)

12.81 (C)

1.04 (M)

0.42 (C)

chrX:125,247,437-125,247,470

rs16998722

SCX-65

15.05 (S)

0.41 (S)

chrX:125,925,884-125,925,893

rs5930055

SCX-67

8.97 (S)

0.56 (C)

6.90 (S)

8.91 (C)

chrX:127,229,700-127,229,720

rs17266605

SCX-78

5.21 (S)

5.80 (S)

chrX:146,960,885-146,960,891

rs6525876

SCX-81

1.09 (S)

12.85 (S)

chrX:147,430,625-147,430,635

rs17252118

  1. aActivity only shown for cell line(s) where region was active
  2. S = S16, M = MN1, C = C2C12