Differential gene transcription across the life cycle in Daphnia magna using a new all genome custom-made microarray

Campos, Bruno; Fletcher, Danielle; Piña, Benjamín; Tauler, Romà; Barata, Carlos

doi:10.1186/s12864-018-4725-7

Table 2 Total and selected significant (P < 0.001) enriched Gene Ontology terms (GOs) of the differentially transcribed genes across the different studied life-cycle stages including genes of E1 from maternal origin (E1F3). N, %Cov are number of probes and coverage. Further details are in Additional file 4. Stage abbreviations are explained in text

From: Differential gene transcription across the life cycle in Daphnia magna using a new all genome custom-made microarray

Acession	GO Term	E1		E1F3		E3		J		F1		F2		F3		F123		M
Total number		1380		829		1323		97		145		146		91		1004		27
		N	% Cov	N	%Cov	N	% Cov	N	% Cov	N	% Cov	N	% Cov	N	% Cov	N	% Cov	N	% Cov
GO:0002176	male germ cell proliferation																	9	0.5
GO:1901476	carbohydrate transporter activity													24	1.5			29	1.6
GO:0042302	structural constituent of cuticle					111	2.1			135	13.1	57	3.6	37	2.3			48	2.7
GO:0009838	abscission													10	0.6
GO:0097493	struct molec act conferring elasticity					83	1.6			97	9.4	51	3.3	30	1.9
GO:0032993	protein-DNA complex	218	2	93	1.6									39	2.5	107	1.7
GO:0042445	hormone metabolic process					223	4.2							81	5.1
GO:0048856	anatomical structure development	7415	68.7			3697	69.8							1128	71.5	4449	70.8
GO:0044851	hair cycle phase											14	0.9
GO:0048180	activin complex									5	0.5
GO:0022611	dormancy process									14	1.4
GO:0031395	bursicon neuropeptide hormone complex							11	0.6
GO:0072562	blood microparticle					55	1
GO:0042562	hormone binding					88	1.7
GO:0007626	locomotory behavior					337	6.4
GO:0004872	receptor activity					418	7.9
GO:0097458	neuron part					1135	21.4									1186	18.9
GO:0071944	cell periphery					2158	40.8									2529	40.3
GO:0042221	response to chemical					2366	44.7
GO:0009653	anatomical structure morphogenesis	4718	43.7	261.5	44.7	2370	44.8									2959	47.1
GO:0044767	single-organism developmental process	7414	68.7			3683	69.6									4523	72.1
GO:0002200	somatic diversification of immune receptors	70	0.6
GO:0002262	myeloid cell homeostasis	172	1.6
GO:0030496	midbody	217	2	154	2.6
GO:0002253	activation of immune response	370	3.4
GO:0032259	methylation	663	6.1	394	6.7
GO:0000989	transc fact act, transcription factor binding	704	6.5
GO:0000785	chromatin	783	7.3
GO:0002520	immune system development	914	8.5
GO:0008283	cell proliferation	1924	17.8													1174	18.7
GO:0016265	death	2139	19.8
GO:0003006	developm proc. involved in reproduction	2267	21
GO:0048646	anatomical struct form morphogenesis	2681	24.9													1689	26.9
GO:0044085	cellular component biogenesis	4056	37.6
GO:0006950	response to stress	4684	43.4													2793	44.5
GO:0006807	nitrogen compound metabolic process	5825	54	3322	56.8
GO:0044422	organelle part	6354	58.9
GO:0016043	cellular component organization	6437	59.7

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ISSN: 1471-2164

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