Table 7 Candidate genes related to secondary metabolism identified in root by KEGG Pathway Mapping
Pathway | Enzyme Name | EC Number | Root Gene ID | Sequence Length | E value |
|---|---|---|---|---|---|
Lignin Pathway | Phenylalanine ammonia lyase | EC:4.3.1.24 | CDS_26921_Unigene_60717 | 2142 | 0 |
Caffeoyl CoA O-methyltransferase | EC:2.1.1.104 | CDS_5516_Unigene_23585 | 720 | 2.69E-122 | |
Caffeic acid O-methyltransferase | EC:2.1.1.68 | CDS_33315_Unigene_71353 | 1092 | 0 | |
4-Coumarate:coenzyme A(CoA) ligase | EC:6.2.1.12 | CDS_14099_Unigene_41223 | 1830 | 4.56E-164 | |
Cinnamoyl-CoA reductase | EC:1.2.1.44 | CDS_7112_Unigene_27968 | 1110 | 0 | |
Hydroxycinnamoyl transferase | EC:2.3.1.133 | CDS_33828_Unigene_72226 | 1308 | 0E + 00 | |
Cinnamate-4-hydroxylase | EC:1.14.13.11 | CDS_10076_Unigene_34389 | 1584 | 0 | |
4-Coumarate 3-hydroxylase | EC:1.14.13.36 | CDS_7933_Unigene_29870 | 1668 | 0.00E + 00 | |
Ferulate 5-hydroxylase | EC: 1.14.-.- | CDS_18772_Unigene_48194 | 1554 | 0 | |
Cinnamyl alcohol dehydrogenase | EC:1.1.1.195 | CDS_10431_Unigene_35075 | 1065 | 0 | |
Saponin Pathway | acetyl-CoA C-acetyltransferase | EC:2.3.1.9 | CDS_18125_Unigene_47323 | 1248 | 0 |
HMG-CoA synthase | EC:2.3.3.10 | CDS_12664_Unigene_38987 | 1407 | 0 | |
HMG-CoA reductase | EC:1.1.1.34 | CDS_10956_Unigene_36039 | 1728 | 0 | |
Mevalonate kinase | EC:2.7.1.36 | CDS_20142_Unigene_50309 | 1167 | 0 | |
Phosphomevalonate kinase | EC:2.7.4.2 | CDS_24841_Unigene_57598 | 1551 | 0 | |
Mevalonate-5-diphosphate decarboxylase | EC:4.1.1.33 | CDS_26736_Unigene_60412 | 1266 | 0 | |
Isopentenyl-PP isomerase | EC:5.3.3.2 | CDS_24864_Unigene_57650 | 1071 | 0 | |
Farnesyl diphosphate synthase | EC:2.5.1.1 2.5.1.10 | CDS_4879_Unigene_21816 | 1119 | 0 | |
Squalene synthase | EC:2.5.1.21 | CDS_3000_Unigene_14589 | 1230 | 0 | |
Squalene epoxidase | EC:1.14.14.17 | CDS_7723_Unigene_29373 | 1329 | 0 | |
Cycloartenol synthase | EC:5.4.99.8 | CDS_16290_Unigene_44550 | 2463 | 0 | |
DOX Phosphate synthase | EC:2.2.1.7 | CDS_29944_Unigene_65832 | 2163 | 0 | |
DOXP Reductoisomerase | EC:1.1.1.267 | CDS_3999_Unigene_18493 | 1413 | 0 | |
Aloin Pathway | keto reductase | EC:1.1.1.184 | CDS_22866_Unigene_54394 | 1164 | 0 |
Octaketide synthase | EC:2.3.1.- | CDS_8049_Unigene_30214 | 1212 | 5.63E-76 | |
UDP glycosyltransferase | EC:2.4.1.- | CDS_5315_Unigene_22956 | 2112 | 1.14E-62 | |
Carotenoid Pathway | phytoene synthase | EC:2.5.1.32 | CDS_17552_Unigene_46473 | 1251 | 0 |
15-cis-phytoene desaturase | EC:1.3.5.5 | CDS_15090_Unigene_42743 | 918 | 0 | |
zeta-carotene isomerase | EC:5.2.1.12 | CDS_23145_Unigene_54818 | 1140 | 0 | |
prolycopene isomerase | EC:5.2.1.13 | CDS_13175_Unigene_39706 | 1070 | 0 | |
lycopene beta-cyclase | EC:5.5.1.19 | CDS_12118_Unigene_38053 | 1533 | 0 | |
lycopene epsilon-cyclase | EC:5.5.1.18 | CDS_14946_Unigene_42534 | 1707 | 0 | |
zeaxanthin epoxidase | EC:1.14.13.90 | CDS_28676_Unigene_63548 | 1992 | 0 | |
violaxanthin de-epoxidase | EC:1.23.5.1 | CDS_37413_Unigene_78465 | 1404 | 0 | |
abscisic-aldehyde oxidase | EC:1.2.3.14 | CDS_12581_Unigene_38831 | 4152 | 0 |