Table 5 Overview of temperature studies and data sets used in discovery analysis
From: Developing specific molecular biomarkers for thermal stress in salmonids
Data sets/studies | Species | Study design | Target tissue | Signature(s) used in discovery | Data used in discovery | Platform | GEO |
|---|---|---|---|---|---|---|---|
Jeffries et al. [30] | Sockeye salmon | 16 control (14 °C) and 24 high temperature exposed (19 °C) fish for 1 week (Chronic) | Gill | ✓ | ✓ | GRASP16K (GPL2716) | GSE33586 |
Jeffries et al. [9] | Pink and Sockeye salmon | 49 control (13–14 °C) and 49 high temperature exposed fish (19 °C) for 5–7 days (Chronic) | Gill | ✓ | ✓ | cGRASP44K (GPL11299) | GSE42558 |
Quinn et al. [33] | Arctic charr | 6 control (6 °C) and 12 high temperature exposed (25 °C) fish for 6–8 h (Acute) | Gill | ✓ | ✓ | cGRASP32K (GPL10096) | GSE26306 |
Quinn et al. [32] | Arctic charr | 10 control (6 °C) and 10 high temperature exposed (15–18 °C) fish for 72 h (Chronic) | Gill | ✓ | cGRASP32K (GPL10096) | GSE29610 | |
Anttila et al. [12] | Sockeye salmon | 4 control (12–13 °C) and 4 high temperature exposed fish (18–19 °C) for 3 days (Chronic) | Heart muscle | ✓ | GRASP16K (GPL3976) | GSE50054 | |
Lewis et al. [34] | Rainbow trout | 6 control (11–13 °C) and 6 high temperature exposed (25 °C) fish for 4 h and 24 h (Acute) | Red blood cells | ✓ | GRASP16K (GPL2716) | GSE21084 |