Table 3 Assembly statistics of Meloidogyne incognita transcriptome generated by Trinity assembler
Parameter | Trinity assembler | Final Ameliorated assembly |
|---|---|---|
Total No. of transcripts assembled | 161,705 | 52,485 |
Transcriptome length (bp) | 113,217,460 (~ 113 Mb) | 48,234,212 bp (~ 48.2 Mb) |
Min transcript length (bp) | 224 | 224 |
Max transcript length (bp) | 8320 | 8320 |
Average transcript length (bp) | 700.15 | 919 |
N50 contig size (bp) | 1004 | 1159 |
% (G + C) | 33.85 | 33.99 |