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Table 1 Significant shared and unshared gene ontology terms between phylogenetically identical organisms (99% V4 16S rRNA)

From: Marker genes as predictors of shared genomic function

Ontology

GO.ID

Term

Count-shared

Count-unshared

P-value

Molecular Function

 unshared

GO:0004803

transposase activity

4591

8641

< 1e-30

 

GO:0003964

RNA-directed DNA polymerase …

165

288

< 1e-30

GO:0097351

toxin-antitoxin pair type II bind …

72

274

< 1e-30

GO:0090729

toxin activity

357

915

< 1e-30

GO:0009036

type II site-specific deoxyribon …

24

180

< 1e-30

 shared

GO:0019843

rRNA binding

42,179

808

< 1e-30

 

GO:0046872

metal ion binding

124,123

28,675

< 1e-30

GO:0003735

structural constituent of ribos …

63,194

2123

< 1e-30

GO:0003723

RNA binding

32,770

4032

< 1e-30

GO:0000287

magnesium ion binding

50,000

8454

< 1e-30

Biological Function

 unshared

GO:0032196

transposition

1435

1887

< 1e-30

 

GO:0045927

positive regulation of growth

69

327

< 1e-30

GO:0045926

negative regulation of growth

86

338

< 1e-30

GO:0051607

defense response to virus

235

756

< 1e-30

GO:0043571

maintenance of CRISPR repeat …

162

560

< 1e-30

 shared

GO:0006412

translation

70,775

2978

< 1e-30

 

GO:0071555

cell wall organization

18,821

1788

< 1e-30

GO:0006457

protein folding

11,000

826

< 1e-30

GO:0009252

peptidoglycan biosynthetic proc. …

16,336

977

< 1e-30

GO:0008360

regulation of cell shape

17,552

1049

< 1e-30

Cellular Component

 unshared

GO:0012506

vesicle membrane

143

220

< 1e-30

 

GO:0009341

beta-galactosidase complex

487

567

< 1e-30

GO:0031469

polyhedral organelle

37

149

< 1e-30

GO:0008305

integrin complex

38

83

< 1e-30

GO:0030077

plasma membrane light-harv …

68

147

< 1e-30

 shared

GO:0015934

large ribosomal subunit

8067

252

< 1e-30

 

GO:0005623

cell

15,927

4518

< 1e-30

GO:0005886

plasma membrane

157,863

45,460

< 1e-30

GO:0015935

small ribosomal subunit

7833

98

< 1e-30

GO:0005737

cytoplasm

248,487

26,478

< 1e-30