Table 3 Genome annotation of bacteriophage DLP4
From: Novel Stenotrophomonas maltophilia temperate phage DLP4 is capable of lysogenic conversion
Gene | Coding region | Length (AA) | Strand | Start codon | Putative function | BLASTp hit | Query coverage | E value | Identity | Accession |
|---|---|---|---|---|---|---|---|---|---|---|
1 | 5–1135 | 377 | + | ATG | hypothetical protein | virion structural protein [Pseudomonas phage AAT-1] | 94% | 3.00E-13 | 62% | AME18051.1 |
2 | 1117–2799 | 561 | + | ATG | serine--glyoxylate aminotransferase | putative virion structural protein [Pseudomonas phage PaMx74] | 95% | 0 | 63% | YP_009199471.1 |
3 | 2799–3611 | 271 | + | ATG | FAD/FMN dehydrogenase | putative virion structural protein [Pseudomonas phage PaMx74] | 100% | 7.00E-151 | 73% | YP_009199472.1 |
4 | 3624–3857 | 78 | + | ATG | virion structural protein | putative virion structural protein [Pseudomonas phage PaMx74] | 98% | 1.00E-39 | 83% | YP_009199473.1 |
5 | 3854–4057 | 68 | + | GTG | hypothetical protein | hypothetical protein PaMx74_35 [Pseudomonas phage PaMx74] | 98% | 7.00E-23 | 64% | YP_009199474.1 |
6 | 4044–6359 | 772 | + | ATG | virion structural protein | putative virion structural protein [Pseudomonas phage PaMx74] | 97% | 0 | 58% | YP_009199475.1 |
7 | 6359–7138 | 260 | + | ATG | tail assembly protein | tail assembly protein [Xylella phage Salvo] | 100% | 2.00E-82 | 51% | AHB12242.1 |
8 | 7142–7306 | 55 | + | ATG | tail assembly protein | tail assembly protein [Xylella phage Sano] | 98% | 1.00E-04 | 37% | AHB12066.1 |
9 | 7316–8260 | 315 | + | ATG | tail assembly protein | tail assembly protein [Xylella phage Salvo] | 99% | 1.00E-90 | 51% | AHB12240.1 |
10 | 8263–9546 | 428 | + | GTG | hypothetical protein | tail fiber protein [Xylella phage Salvo] | 24% | 7.00E-12 | 41% | AHB12239.1 |
11 | 9543–9848 | 102 | + | GTG | hypothetical protein | hypothetical protein AAT1_02032 [Pseudomonas phage AAT-1] | 98% | 7.00E-39 | 64% | AME18058.1 |
12 | 9845–10,339 | 165 | + | ATG | endolysin | putative endolysin [Pseudomonas phage PaMx74] | 99% | 3.00E-92 | 83% | YP_009199477.1 |
13 | 10,350–10,826 | 159 | + | ATG | i-spanin | virion structural protein [Pseudomonas phage PaMx28] | 100% | 8.00E-59 | 63% | YP_009210650.1 |
14 | 10,639–11,013 | 125 | + | GTG | o-spanin | putative o-spanin [Pseudomonas phage AAT-1] | 96% | 2.00E-51 | 68% | ANN44564.1 |
15 | 11,010–11,285 | 92 | + | GTG | hypothetical membrane protein | putative membrane protein [Pseudomonas phage PaMx74] | 98% | 2.00E-37 | 67% | YP_009199480.1 |
16 | 11,417–11,593 | 59 | – | ATG | hypothetical protein | hypothetical protein PaMx74_42 [Pseudomonas phage PaMx74] | 98% | 4.00E-04 | 40% | YP_009199481.1 |
17 | 11,661–11,891 | 77 | – | ATG | hypothetical protein | hypothetical protein PaMx74_43 [Pseudomonas phage PaMx74] | 67% | 3.00E-14 | 63% | YP_009199482.1 |
18 | 11,918–12,202 | 95 | – | ATG | hypothetical protein | hypothetical protein AAT1_02038 [Pseudomonas phage AAT-1] | 90% | 4.00E-04 | 37% | AME18064.1 |
19 | 12,186–12,491 | 102 | – | ATG | HIRAN domain protein | putative HIRAN domain-containing protein [Pseudomonas phage PaMx28] | 92% | 2.00E-27 | 57% | YP_009210657.1 |
20 | 12,491–13,048 | 186 | – | ATG | hypothetical protein | hypothetical protein PaMx74_46 [Pseudomonas phage PaMx74] | 98% | 5.00E-58 | 60% | YP_009199485.1 |
21 | 13,171–13,839 | 223 | – | ATG | hypothetical protein | hypothetical protein PaMx74_47 [Pseudomonas phage PaMx74] | 98% | 7.00E-62 | 50% | YP_009199486.1 |
22 | 14,040–14,264 | 75 | – | ATG | hypothetical protein | hypothetical protein PaMx74_48 [Pseudomonas phage PaMx74] | 85% | 7.00E-25 | 76% | YP_009199487.1 |
23 | 14,386–14,832 | 149 | – | GTG | hypothetical protein | hypothetical protein PaMx74_49 [Pseudomonas phage PaMx74] | 94% | 3.00E-70 | 75% | YP_009199488.1 |
24 | 14,817–15,305 | 163 | – | ATG | FolA/DHFR | putative dihydrofolate reductase [Pseudomonas phage PaMx74] | 100% | 3.00E-59 | 61% | YP_009199489.1 |
25 | 15,290–15,766 | 159 | – | ATG | deoxycytidylate deaminase | putative dCMP deaminase [Pseudomonas phage PaMx74] | 92% | 6.00E-70 | 70% | YP_009199490.1 |
26 | 15,766–16,707 | 314 | – | GTG | thymidylate synthase | thymidylate synthase [Pseudomonas phage AAT-1] | 98% | 1.00E-161 | 71% | AME18072.1 |
27 | 16,704–17,477 | 258 | – | ATG | nucleotide pyrophosphohydrolase | putative nucleotide pyrophosphohydrolase [Pseudomonas phage AAT-1] | 89% | 3.00E-106 | 63% | AME18073.1 |
28 | 17,553–17,783 | 77 | – | ATG | hypothetical protein | |||||
29 | 17,786–18,805 | 340 | – | ATG | hypothetical protein | hypothetical protein PaMx28_55 [Pseudomonas phage PaMx28] | 97% | 0 | 74% | YP_009210667.1 |
30 | 18,920–19,384 | 155 | – | ATG | hypothetical protein | hypothetical protein PaMx28_56 [Pseudomonas phage PaMx28] | 61% | 2.00E-42 | 78% | YP_009210668.1 |
31 | 19,526–21,004 | 493 | – | GTG | helicase | putative helicase [Pseudomonas phage PaMx74] | 99% | 0 | 80% | YP_009199496.1 |
32 | 21,001–23,376 | 792 | – | ATG | DNA polymerase | putative DNA polymerase [Pseudomonas phage PaMx74] | 90% | 0 | 77% | YP_009199498.1 |
33 | 23,405–23,851 | 149 | – | GTG | hypothetical protein | hypothetical protein AAT1_02054 [Pseudomonas phage AAT-1] | 100% | 6.00E-60 | 57% | AME18080.1 |
34 | 23,848–24,237 | 130 | – | TTG | hypothetical protein | hypothetical protein PaMx74_61 [Pseudomonas phage PaMx74] | 99% | 3.00E-60 | 75% | YP_009199500.1 |
35 | 24,234–24,578 | 115 | – | ATG | hypothetical protein | hypothetical protein PaMx74_63 [Pseudomonas phage PaMx74] | 93% | 2.00E-54 | 75% | YP_009199502.1 |
36 | 24,575–25,258 | 228 | – | ATG | hypothetical protein | hypothetical protein PaMx74_65 [Pseudomonas phage PaMx74] | 99% | 1.00E-89 | 56% | YP_009199504.1 |
37 | 25,248–25,448 | 67 | – | GTG | hypothetical protein | hypothetical protein PaMx74_66 [Pseudomonas phage PaMx74] | 93% | 8.00E-19 | 58% | YP_009199505.1 |
38 | 25,445–25,672 | 76 | – | ATG | hypothetical protein | |||||
39 | 25,793–26,404 | 204 | – | ATG | DNA binding protein | putative DNA binding protein [Pseudomonas phage PaMx28] | 99% | 2.00E-108 | 78% | YP_009210678.1 |
40 | 26,538–27,317 | 260 | – | ATG | hypothetical protein | hypothetical protein PaMx28_69 [Pseudomonas phage PaMx28] | 77% | 1.00E-76 | 59% | YP_009210681.1 |
41 | 27,390–28,868 | 493 | – | ATG | Cas4 nuclease | PD-(D/E) XK nuclease superfamily protein | 99% | 0 | 72% | YP_009210682.1 |
42 | 28,918–29,181 | 88 | – | ATG | hypothetical protein | hypothetical protein PaMx74_72 [Pseudomonas phage PaMx74] | 95% | 5.00E-43 | 81% | YP_009199511.1 |
43 | 29,178–29,702 | 175 | – | ATG | hypothetical protein | hypothetical protein PaMx28_72 [Pseudomonas phage PaMx28] | 98% | 6.00E-23 | 43% | YP_009210684.1 |
44 | 29,904–30,074 | 57 | + | ATG | hypothetical protein | hypothetical protein PaMx74_74 [Pseudomonas phage PaMx74] | 89% | 6.00E-16 | 72% | YP_009199513.1 |
45 | 30,071–32,392 | 774 | + | GTG | primase | putative primase/polymerase [Pseudomonas phage PaMx74] | 99% | 0 | 85% | YP_009199514.1 |
46 | 33,021–33,638 | 206 | + | GTG | small terminase | terminase large subunit [Pseudomonas phage AAT-1] | 95% | 9.00E-108 | 77% | AME18098.1 |
47 | 33,701–33,919 | 73 | + | ATG | hypothetical protein | |||||
48 | 33,929–34,171 | 81 | + | ATG | hypothetical protein | hypothetical protein PaMx74_02 [Pseudomonas phage PaMx74] | 93% | 1.00E-27 | 67% | YP_009199441.1 |
49 | 34,168–34,362 | 65 | + | ATG | deoxynucleoside monophosphate kinase | hypothetical protein [Lysobacter sp. Root667] | 78% | 1.00E-08 | 56% | WP_056102216.1 |
50 | 34,359–34,577 | 73 | + | ATG | hypothetical protein | hypothetical protein [Lysobacter capsici] | 76% | 2.00E-06 | 47% | WP_057921118.1 |
51 | 34,581–35,045 | 155 | + | GTG | RNA Pseudouradine synthase | |||||
52 | 35,045–36,514 | 490 | + | ATG | large terminase | putative terminase large subunit [Pseudomonas phage PaMx74] | 100% | 0 | 80% | YP_009199443.1 |
53 | 37,156–37,560 | 135 | + | ATG | hypothetical protein | hypothetical protein PaMx74_06 [Pseudomonas phage PaMx74] | 98% | 6.00E-07 | 34% | YP_009199445.1 |
54 | 37,557–37,991 | 145 | + | ATG | hypothetical protein | 1 | ||||
55 | 38,200–40,020 | 607 | + | ATG | nrdA | nrdA [uncultured Mediterranean phage uvMED] | 97% | 0 | 51% | BAQ94146.1 |
56 | 40,028–41,020 | 547 | + | ATG | nrdB | nrdB [uncultured Mediterranean phage uvMED] | 94% | 5.00E-126 | 54% | BAR25383.1 |
57 | 41,131–42,771 | 331 | + | ATG | hypothetical protein | hypothetical protein PaMx74_08 [Pseudomonas phage PaMx74] | 99% | 4.00E-169 | 51% | YP_009199447.1 |
58 | 42,840–43,274 | 145 | + | ATG | hypothetical protein | hypothetical protein PaMx74_10 [Pseudomonas phage PaMx74] | 81% | 1.00E-06 | 40% | YP_009199449.1 |
59 | 43,271–44,059 | 263 | + | GTG | polynucleotide kinase | hypothetical protein [Mitsuaria chitosanitabida] | 58% | 3.00E-38 | 46% | WP_067070380.1 |
60 | 44,059–44,955 | 299 | + | ATG | DNA ligase | putative DNA ligase [Pseudomonas phage PaMx74] | 97% | 2.00E-106 | 57% | YP_009199450.1 |
61 | 45,042–46,562 | 507 | + | ATG | portal protein | structural protein [Pseudomonas phage AAT-1] | 94% | 0 | 78% | AME18030.1 |
62 | 46,562–50,131 | 1190 | + | ATG | minor head protein | morphogenesis protein [Pseudomonas phage PaMx28] | 100% | 0 | 75% | YP_009210622.1 |
63 | 50,133–50,405 | 91 | + | ATG | hypothetical protein | hypothetical protein PaMx28_11 [Pseudomonas phage PaMx28] | 95% | 1.00E-42 | 80% | YP_009210623.1 |
64 | 50,549–51,334 | 262 | + | ATG | virion structural protein | virion structural protein [Pseudomonas phage AAT-1] | 98% | 8.00E-146 | 78% | AME18033.1 |
65 | 51,384–51,869 | 162 | – | GTG | YbiA | putative YbiA-like protein [Pseudomonas phage PaMx28] | 98% | 2.00E-81 | 72% | YP_009210625.1 |
66 | 51,909–52,817 | 303 | – | ATG | hypothetical protein | hypothetical protein PaMx74_15 [Pseudomonas phage PaMx74] | 99% | 3.00E-70 | 47% | YP_009199454.1 |
67 | 52,903–53,280 | 126 | – | ATG | hypothetical protein | hypothetical protein AAT1_02012 [Pseudomonas phage AAT-1] | 73% | 2.00E-19 | 49% | AME18037.1 |
68 | 53,292–53,621 | 110 | – | ATG | hypothetical protein | hypothetical protein [Enterobacteriaceae] | 65% | 0.034 | 35% | WP_044347588.1 |
69 | 53,636–53,848 | 71 | – | ATG | hypothetical protein | hypothetical protein AAT1_02013 [Pseudomonas phage AAT-1] | 80% | 9.00E-20 | 71% | AME18038.1 |
70 | 53,856–54,095 | 80 | – | ATG | hypothetical protein | |||||
71 | 54,657–55,589 | 311 | + | ATG | major head protein | major head protein [Pseudomonas phage PaMx28] | 99% | 0 | 87% | YP_009210631.1 |
72 | 55,657–55,890 | 78 | + | ATG | hypothetical protein | |||||
73 | 55,957–56,568 | 204 | + | ATG | hypothetical protein | hypothetical protein PaMx74_20 [Pseudomonas phage PaMx74] | 99% | 5.00E-47 | 49% | YP_009199459.1 |
74 | 56,591–57,115 | 175 | + | ATG | virion structural protein | putative virion structural protein [Pseudomonas phage PaMx74] | 99% | 1.00E-84 | 72% | YP_009199461.1 |
75 | 57,117–57,485 | 123 | + | ATG | virion structural protein | putative virion structural protein [Pseudomonas phage PaMx74] | 100% | 2.00E-46 | 61% | YP_009199462.1 |
76 | 57,487–57,879 | 131 | + | GTG | virion structural protein | virion structural protein [Pseudomonas phage PaMx28] | 98% | 5.00E-72 | 80% | YP_009210635.1 |
77 | 57,892–58,314 | 141 | + | ATG | tail terminator protein | putative tail terminator protein [Pseudomonas phage PaMx74] | 97% | 6.00E-92 | 93% | YP_009199464.1 |
78 | 58,337–59,278 | 314 | + | ATG | major tail structural protein | major tail structural protein [Pseudomonas phage AAT-1] | 100% | 0 | 80% | AME18046.1 |
79 | 59,283–59,729 | 149 | + | ATG | hypothetical protein | hypothetical protein AAT1_02022 [Pseudomonas phage AAT-1] | 89% | 3.00E-54 | 61% | AME18047.1 |
80 | 59,768–60,013 | 82 | + | ATG | hypothetical protein | hypothetical protein PaMx74_28 [Pseudomonas phage PaMx74] | 100% | 3.00E-46 | 90% | YP_009199467.1 |
81 | 60,117–62,474 | 786 | + | ATG | tape measure protein | putative tail tape measure protein [Pseudomonas phage PaMx74] | 99% | 0 | 74% | YP_009199468.1 |
82 | 62,490–63,944 | 485 | + | ATG | tail fiber structural protein | tail fiber structural protein [Pseudomonas phage MP1412] | 100% | 3.00E-98 | 39% | YP_006561077.1 |