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Table 5 Gene ontology terms overrepresented among differentially expressed genes in liver

From: A comparative analysis of the transcriptome profiles of liver and muscle tissue in pigs divergent for feed efficiency

Term

Count

B-H p-values

GO terms overrepresented among DEGs with higher expression in the LRFI group vs HRFI group

 GO:0022613~ribonucleoprotein complex biogenesis

35

2.25E-04

 GO:0006396~RNA processing

53

2.29E-04

 GO:0051607~defense response to virus

22

5.93E-04

 GO:0060337~type I interferon signalling pathway

13

5.99E-04

 GO:0034097~response to cytokine

45

0.001367

 GO:0016070~RNA metabolic process

161

0.004935

 GO:0046395~carboxylic acid catabolic process

18

0.005979

 GO:0006952~defense response

67

5.93E-04

 GO:0055088~lipid homeostasis

14

0.007424

 GO:0010628~positive regulation of gene expression

71

0.012472

GO terms overrepresented among DEGs with lower expression in the LRFI group vs HRFI group

 GO:0007166~cell surface receptor signalling pathway

120

1.86E-06

 GO:0030198~extracellular matrix organisation

32

1.91E-06

 GO:0043062~extracellular structure organisation

32

1.37E-06

 GO:0022610~biological adhesion

85

4.48E-06

 GO:0007155~cell adhesion

84

6.60E-06

 GO:2000026~regulation of multicellular organismal development

78

6.00E-04