Table 1 Isolate information (A), genome (B) and predicted gene set statistics for lupin-infecting isolates of Sclerotinia sclerotiorum and Botrytis cinerea compared to reference isolates
Sclerotinia sclerotiorum | Sclerotinia sclerotiorum | Sclerotinia sclerotiorum | Botrytis cinerea | Botrytis cinerea | |
|---|---|---|---|---|---|
A) Isolate information | |||||
Isolate abbreviation | Sscl-Lang | Sscl-Lmut | Sscl-Ref | Bcin-Lang | Bcin-Ref |
Isolate ID | – | – | 1980 UF-70 | WAC9891 | B05.10 |
Isolated from (host species) | Lupinus angustifolius | Lupinus mutabilis | Phaseolus vulgaris | Lupinus angustifolius | Unknown |
Isolated from (region) | Western Australia | Western Australia | Nebraska, USA | Western Australia | Germany |
B) Genome | |||||
Total assembly length (Mbp) | 38.40 | 38.44 | 38.81 | 41.98 | 42.90 |
Maximum length (Mbp) | 1.1 | 0.7 | 3.9 | 1.7 | 4.1 |
N50 length (Mbp) | 0.2 | 0.2 | 2.4 | 0.6 | 2.4 |
Total sequences | 796 | 1091 | 16 | 216 | 18 |
GC% | 41.5 | 41.5 | 41.5 | 42.0 | 42.0 |
%Repetitive (de novo) | 6.3 | 6.5 | 9.5 | 2.5 | 4.4 |
%Repetitive (Repbase:“Fungi”) | 2.3 | 2.4 | 4.2 | 1.7 | 3.1 |
C) Predicted gene set | |||||
CEGMA % (complete | partial) | 95.97 | 98.39 | 97.18 | 99.19 | – | 96.37 | 98.79 | 96 | 98.8 |
Total number of predicted proteins | 12,196 | 12,146 | 11,368 | 13,353 | 11,701 |
Exons / Gene | 3 | 3 | – | 2.9 | – |
Introns / Gene | 2 | 2 | – | 1.9 | – |
Proteins with GO annotation | 4925 (40.4%) | 4922 (40.5%) | 5745 (50.5%) | 5422 (40.6%) | – |
Proteins with Pfam annotation | 7025 (57.6%) | 6995 (57.6%) | 7298 (64.2%) | 7772 (58.2%) | – |